Package: maq (0.7.1-9)

[ Source: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Other Packages Related to maq

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.5) [armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [not amd64, armel, armhf, s390x]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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Architecture	Package Size	Installed Size	Files
amd64	295.7 kB	543.0 kB	[list of files]
arm64	286.7 kB	519.0 kB	[list of files]
armel	285.5 kB	530.0 kB	[list of files]
armhf	286.9 kB	474.0 kB	[list of files]
i386	306.2 kB	575.0 kB	[list of files]
mips64el	296.9 kB	578.0 kB	[list of files]
mipsel	303.5 kB	577.0 kB	[list of files]
ppc64el	304.8 kB	647.0 kB	[list of files]
s390x	288.4 kB	547.0 kB	[list of files]