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[ Source: bali-phy  ]

Package: bali-phy (3.6.0+dfsg-1)

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Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 6,034.2 kB35,682.0 kB [list of files]
arm64 5,431.3 kB32,438.0 kB [list of files]
armel 4,564.5 kB29,752.0 kB [list of files]
armhf 4,260.7 kB22,024.0 kB [list of files]
i386 5,831.4 kB35,044.0 kB [list of files]
mips64el 5,573.4 kB42,247.0 kB [list of files]
mipsel 5,537.4 kB40,464.0 kB [list of files]
ppc64el 6,131.2 kB40,892.0 kB [list of files]
s390x 4,991.8 kB35,522.0 kB [list of files]