Package: python3-dna-jellyfish (2.3.0-15 and others)
Links for python3-dna-jellyfish
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Other Packages Related to python3-dna-jellyfish
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 9) [not armel, armhf]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
Download python3-dna-jellyfish
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 2.3.0-15+b3 | 52.1 kB | 175.0 kB | [list of files] |
| arm64 | 2.3.0-15+b3 | 49.6 kB | 171.0 kB | [list of files] |
| armel | 2.3.0-15+b3 | 51.9 kB | 168.0 kB | [list of files] |
| armhf | 2.3.0-15+b3 | 52.8 kB | 140.0 kB | [list of files] |
| i386 | 2.3.0-15+b3 | 60.5 kB | 184.0 kB | [list of files] |
| mips64el | 2.3.0-15+b3 | 50.5 kB | 242.0 kB | [list of files] |
| ppc64el | 2.3.0-15+b3 | 55.1 kB | 235.0 kB | [list of files] |