Package: edlib-aligner (1.2.7-4 and others)

[ Source: libedlib  ]

edlib sequence alignment tool using edit distance

Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.

Features of libedlib

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

Other Packages Related to edlib-aligner

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libedlib1 (= 1.2.7-4+b1)

  library for sequence alignment using edit distance

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

Download edlib-aligner

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.2.7-4+b1	24.2 kB	67.0 kB	[list of files]
arm64	1.2.7-4+b1	22.4 kB	87.0 kB	[list of files]
armel	1.2.7-4+b1	19.6 kB	54.0 kB	[list of files]
armhf	1.2.7-4+b1	19.7 kB	46.0 kB	[list of files]
i386	1.2.7-4+b1	23.2 kB	62.0 kB	[list of files]
mips64el	1.2.7-4+b1	23.1 kB	88.0 kB	[list of files]
mipsel	1.2.7-4+b1	22.3 kB	87.0 kB	[list of files]
ppc64el	1.2.7-4+b1	27.4 kB	87.0 kB	[list of files]
s390x	1.2.7-4+b1	22.7 kB	67.0 kB	[list of files]