Balíky softvéru v „stretch“, Subsekcia science

3depict (0.0.19-1+b1)
vizualizácia a analýza jednohodnotových bodových dát
abacas (1.3.1-3)
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (8.0.8-1+b1)
package for electronic structure calculations
abyss (2.0.2-2)
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.02-1)
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.02-1)
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.02-1)
visualisation of sequence similarity
aces3 (3.0.8-5.1+b1)
Advanced Concepts in Electronic Structure III
aces3-data (3.0.8-5.1)
Advanced Concepts in Electronic Structure III
achilles (2-8.2+b1)
simulátor umelého života a evolúcie
adapterremoval (2.2.0-1)
rapid adapter trimming, identification, and read merging of gene sequences
adapterremoval-examples (2.2.0-1)
rapid adapter trimming, identification, and read merging (example data)
adun-core (0.81-9+b2)
simulátor molekúl
aegean (0.15.2+dfsg-1)
integrated genome analysis toolkit
aeskulap (0.2.2b1+git20161206-1)
prehliadač medicínskych obrázkov a sieťový klient DICOM
aevol (4.4-1+b5 [arm64], 4.4-1+b4 [amd64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el, s390x])
digital genetics model to run Evolution Experiments in silico
aghermann (1.1.2-1)
Sleep-research experiment manager
alfa (1.0-2)
Automated Line Fitting Algorithm
algotutor (0.8.6-1)
program for observing the intermediate steps of algorithm
alien-hunter (1.7-5)
Interpolated Variable Order Motifs na identifikáciu DNA získanej horizontálnym prenosom
altree (1.3.1-4+b2)
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-4)
example files for ALTree
amap-align (2.2-6)
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-6)
removal of noise from 454 sequenced PCR amplicons
andi (0.10-2)
Efficient Estimation of Evolutionary Distances
anfo (0.98-5)
Short Read Aligner/Mapper from MPG
ants (2.1.0-5)
advanced normalization tools for brain and image analysis
aoflagger (2.9.0-1)
Find RFI in radio astronomical observations
apbs (1.4-1+b1)
Adaptive Poisson Boltzmann Solver
apertium-af-nl (0.2.0~r58256-1)
Apertium - prekladové dáta dvojice afrikánčina-holandčina
apertium-apy (0.9.1~r343-2)
služba Apertium APY
apertium-arg (0.1.2~r65494-1)
Apertium - dáta jednotlivého jazyka - aragónčina
apertium-arg-cat (0.1.0~r64925-1)
Apertium - prekladové dáta dvojice aragónčina-katalánčina
apertium-br-fr (0.5.0~r61325-2)
Apertium - prekladové dáta dvojice bretónčina-francúzština
apertium-ca-it (0.1.1~r57554-1)
Apertium - prekladové dáta dvojice katalánčina-taliančina
apertium-cat (1.0.0~r65787-1)
Apertium - dáta jednotlivého jazyka - katalánčina
apertium-cy-en (0.1.1~r57554-3)
Apertium - prekladové dáta dvojice waleština-angličtina
apertium-dan (0.5.0~r67099-1)
Apertium - dáta jednotlivého jazyka - dánčina
apertium-dan-nor (1.3.0~r67099-1)
Apertium - prekladové dáta dvojice dánčina-nórčina
apertium-dev (3.4.0~r61013-5+b1)
vývojové nástroje a knižnica Apertium
apertium-en-gl (0.5.2~r57551-1)
Apertium - prekladové dáta dvojice angličtina-galícijčina
apertium-eo-en (1.0.0~r63833-1)
Apertium linguistic data to translate between Esperanto and English
apertium-eo-fr (0.9.0~r57551-1)
Apertium - prekladové dáta dvojice esperanto-francúzština
apertium-es-ast (1.1.0~r51165-1)
Apertium - prekladové dáta dvojice španielčina-astúrčina
apertium-es-it (0.1.0~r51165-1)
Apertium - prekladové dáta dvojice španielčina-taliančina
apertium-eu-en (0.3.1~r56205-1)
Apertium - prekladové dáta dvojice baskičtina-angličtina
apertium-fra (1.0.0~r65786-1)
Apertium - dáta jednotlivého jazyka - francúzština
apertium-fra-cat (1.1.0~r64309-1)
Apertium - prekladové dáta dvojice francúzština-katalánčina
apertium-hbs (0.5.0~r68212-2)
Apertium - dáta jednotlivého jazyka - srbochorvátčina
apertium-hbs-eng (0.1.0~r57598-1)
Apertium - prekladové dáta dvojice srbochorvátčina-angličtina
apertium-hbs-mkd (0.1.0~r57554-1)
Apertium - prekladové dáta dvojice srbochorvátčina-macedónčina
apertium-hbs-slv (0.1.0~r59294-1)
Apertium - prekladové dáta dvojice srbochorvátčina-slovinčina
apertium-hin (0.1.0~r59158-1)
Apertium - dáta jednotlivého jazyka - hindčina
apertium-id-ms (0.1.1~r57551-1)
Apertium - prekladové dáta dvojice indonézština-malajčina
apertium-is-sv (0.1.0~r56030-1)
Apertium - prekladové dáta dvojice islandčina-švédčina
apertium-isl (0.1.0~r65494-1)
Apertium - dáta jednotlivého jazyka - islandčina
apertium-isl-eng (0.1.0~r66083-1)
Apertium - prekladové dáta dvojice islandčina-angličtina
apertium-ita (0.9.0~r72553-1)
Apertium - dáta jednotlivého jazyka - taliančina
apertium-kaz (0.1.0~r61338-1)
Apertium - dáta jednotlivého jazyka - kazaština
apertium-kaz-tat (0.2.1~r57554-1)
Apertium - prekladové dáta dvojice kazaština-tatárčina
apertium-lex-tools (0.1.1~r66150-1+b1)
modul lexikálneho výberu založeného na obmedzeniach
apertium-mk-bg (0.2.0~r49489-1)
Apertium - prekladové dáta dvojice macedónčina-bulharčina
apertium-mk-en (0.1.1~r57554-1)
Apertium - prekladové dáta dvojice macedónčina-angličtina
apertium-mlt-ara (0.2.0~r62623-1)
Apertium - prekladové dáta dvojice maltčina-arabčina
apertium-nno (0.9.0~r69513-1)
Apertium - dáta jednotlivého jazyka - nórsky nynorsk
apertium-nno-nob (1.1.0~r66076-1)
Apertium - prekladové dáta dvojice nórsky nynorsk-nórsky bokmål
apertium-nob (0.9.0~r69513-1)
Apertium - dáta jednotlivého jazyka - nórsky bokmål
apertium-sme-nob (0.6.0~r61921-1)
Apertium - prekladové dáta dvojice severná saamčina-nórsky bokmål
apertium-spa (0.1.0~r65494-1)
Apertium - dáta jednotlivého jazyka - španielčina
apertium-spa-arg (0.4.0~r64399-1)
Apertium - prekladové dáta dvojice španielčina-aragónčina
apertium-srd (0.9.0~r72792-1)
Apertium - dáta jednotlivého jazyka - sardínčina
apertium-srd-ita (0.9.0~r72554-1)
Apertium - prekladové dáta dvojice sardínčina-taliančina
apertium-swe (0.7.0~r69513-1)
Apertium - dáta jednotlivého jazyka - švédčina
apertium-swe-dan (0.7.0~r66063-1)
Apertium - prekladové dáta dvojice švédčina-dánčina
apertium-tat (0.1.0~r60887-1)
Apertium - dáta jednotlivého jazyka - tatárčina
apertium-urd (0.1.0~r61311-1)
Apertium - dáta jednotlivého jazyka - urdčina
apertium-urd-hin (0.1.0~r64379-1)
Apertium - prekladové dáta dvojice urdčina-hindčina
aragorn (1.2.38-1)
tRNA and tmRNA detection in nucleotide sequences
arb (6.0.6-1) [non-free]
phylogenetic sequence analysis suite - main program
arb-common (6.0.6-1) [non-free]
phylogenetic sequence analysis suite - common files
arden (1.0-3)
specificity control for read alignments using an artificial reference
ariba (2.6.1+ds-1)
Antibiotic Resistance Identification By Assembly
art-nextgen-simulation-tools (20160605+dfsg-2)
simulation tools to generate synthetic next-generation sequencing reads
art-nextgen-simulation-tools-profiles (20160605+dfsg-2)
profiles for art simulation tools
artemis (16.0.17+dfsg-1)
genome browser and annotation tool
artfastqgenerator (0.0.20150519-2)
outputs artificial FASTQ files derived from a reference genome
artfastqgenerator-examples (0.0.20150519-2)
ou7puts artificial FASTQ files derived from a reference genome (examples)
asdftool (1.2.1-2)
Command line tool to manipulate ASDF scientific data files
ask (1.1.1-1)
Adaptive Sampling Kit for big experimental spaces
astro-tasks (1.0)
Debian Astronomy Pure Blend (tasksel tasks)
astromatic (1.1)
Astronomical pipeline software collection
astrometry-data-2mass (1.1) [contrib] 2MASS index files downloader
astrometry-data-2mass-00 (1.1) [contrib] 2MASS index files downloader (2'-2.8')
astrometry-data-2mass-01 (1.1) [contrib] 2MASS index files downloader (2.8'-4')
astrometry-data-2mass-02 (1.1) [contrib] 2MASS index files downloader (4'-5.6')
astrometry-data-2mass-03 (1.1) [contrib] 2MASS index files downloader (5.6'-8')
astrometry-data-2mass-04 (1.1) [contrib] 2MASS index files downloader (8'-11')
astrometry-data-2mass-05 (1.1) [contrib] 2MASS index files downloader (11'-16')
astrometry-data-2mass-06 (1.1) [contrib] 2MASS index files downloader (16'-22')
astrometry-data-2mass-07 (1.1) [contrib] 2MASS index files downloader (22'-30')
astrometry-data-2mass-08-19 (1.1) [contrib] 2MASS index files downloader (30'-2000')
astrometry-data-tycho2 (2-3) Tycho-2 index files
astrometry-data-tycho2-07 (2-3) Tycho-2 index files (22'-30')
astrometry-data-tycho2-07-bigendian (2-3) Tycho-2 big endian index files (22'-30')
astrometry-data-tycho2-07-littleendian (2-3) Tycho-2 little endian index files (22'-30')
astrometry-data-tycho2-08 (2-3) Tycho-2 index files (30'-44')
astrometry-data-tycho2-08-bigendian (2-3) Tycho-2 big endian index files (30'-44')
astrometry-data-tycho2-08-littleendian (2-3) Tycho-2 little endian index files (30'-44')
astrometry-data-tycho2-09 (2-3) Tycho-2 index files (44'-60')
astrometry-data-tycho2-09-bigendian (2-3) Tycho-2 big endian index files (44'-60')
astrometry-data-tycho2-09-littleendian (2-3) Tycho-2 little endian index files (44'-60')
astrometry-data-tycho2-10-19 (2-3) Tycho-2 index files (60'-2000')
astrometry-data-tycho2-10-19-bigendian (2-3) Tycho-2 big endian index files (60'-2000')
astrometry-data-tycho2-10-19-littleendian (2-3) Tycho-2 little endian index files (60'-2000') (0.70+dfsg-1)
doskový riešiteľ Astrometry
astronomical-almanac (5.6-4+b2)
astronomical almanac - calculate planet and star positions
astropy-utils (1.3-8)
Command line tools from astropy
atac (0~20150903+r2013-3)
genome assembly-to-assembly comparison
augustus (3.2.3+dfsg-1)
gene prediction in eukaryotic genomes
augustus-data (3.2.3+dfsg-1)
data files for AUGUSTUS
autodock (4.2.6-3+b1)
analysis of ligand binding to protein structure
autodock-getdata (4.2.6-3)
instructions for getData to collect compounds
autodock-test (4.2.6-3)
test files for AutoDock
autodock-vina (1.1.2-3+b6 [amd64], 1.1.2-3+b5 [armel, armhf, i386, mips, mipsel, s390x], 1.1.2-3+b4 [arm64, ppc64el], 1.1.2-3+b2 [mips64el])
docking of small molecules to proteins
autogrid (4.2.6-3+b1)
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.6-3)
test files for AutoGrid
avce00 (2.0.0-5)
Conversion of ESRI Arcinfo Vector Coverage in E00 format
avogadro (1.2.0-1+deb9u1)
systém molekulárnej grafiky a modelovania
avogadro-data (1.2.0-1+deb9u1)
systém molekulárnej grafiky a modelovania - dátové súbory
aweather (0.8.1-1.1)
Advanced Weather Monitoring Program
axe-demultiplexer (0.3.2+dfsg1-1)
Trie-based DNA sequencing read demultiplexer
bagel (0.0~git20170109-1)
Computational Chemistry Package
bagel-data (0.0~git20170109-1)
Computational Chemistry Package (data files)
ballview (1.4.3~beta1-3)
slobodný nástroj na modelovanie a zobrazovanie molekúl
bamtools (2.4.1+dfsg-1)
toolkit for manipulating BAM (genome alignment) files
barrnap (0.7+dfsg-2)
rapid ribosomal RNA prediction
bart (0.4.00-1)
tools for computational magnetic resonance imaging
bauble (0.9.7-2.1)
biodiversity collection manager software application
bcftools (1.3.1-1+b1)
genomic variant calling and manipulation of VCF/BCF files
beagle (4.1~160727-86a+dfsg-1)
Genotype calling, genotype phasing and imputation of ungenotyped markers
beast-mcmc (1.8.4+dfsg.1-1)
Bayesian MCMC phylogenetic inference
beast2-mcmc (2.4.4+dfsg-1)
Bayesian MCMC phylogenetic inference
bedtools (2.26.0+dfsg-3)
suite of utilities for comparing genomic features
bedtools-test (2.26.0+dfsg-3)
test data for the bedtools package
berkeley-express (1.5.1-3+b1)
Streaming quantification for high-throughput sequencing
bibus (1.5.2-4)
bibliografická databáza
bio-eagle (2.3-3)
Haplotype phasing within a genotyped cohort or using a phased reference panel
bio-eagle-examples (2.3-3)
Examples for bio-eagle
bio-rainbow (2.0.4-1+b1)
clustering and assembling short reads for bioinformatics
biogenesis (0.8-2)
artificial life program that simulates evolution of organisms
biomaj (1.2.3-11)
biological data-bank updater
biomaj-properties (1.2.3-11)
biological data-bank updater - example properties files
biomaj-watcher (1.2.2-4) [contrib]
biological data-bank updater - web interface
bioperl (1.7.1-2)
nástroje jazyka Perl na výpočtovú molekulárnu biológiu
bioperl-run (1.7.1-3)
BioPerl wrappers: scripts
biosig-tools (1.3.0-2.2)
nástroje na konverziu formátov biomedicínskych dát
biosquid (1.9g+cvs20050121-7)
utilities for biological sequence analysis
bist (0.5.2-1.1+b1)
nástroj na chemické kreslenie
bkchem (0.13.0-5)
Chemical structures editor
blasr (5.3+0-1)
mapping single-molecule sequencing reads
blast2 (1:2.6.0-1)
prechodový fiktívny balík na ncbi-blast+-legacy
blimps-utils (3.9-1) [non-free]
blocks database improved searcher
bmt (0.6-1)
software analysis benchmarking toolkit
bodr (10-1)
Blue Obelisk Data Repository
boinc-app-seti (8.00~svn3363-3)
aplikácia SETI@home pre klienta BOINC
boinc-app-seti-graphics (8.00~svn3363-3)
aplikácia SETI@home pre klienta BOINC - s grafickým rozhraním
boolector (
SMT solver for bit-vectors and arrays
bowtie (1.1.2-6)
Ultrafast memory-efficient short read aligner
bowtie-examples (1.1.2-6)
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.3.0-2)
ultrafast memory-efficient short read aligner
bowtie2-examples (2.3.0-2)
Examples for bowtie2
boxshade (3.3.1-10)
Pretty-printing of multiple sequence alignments
bppphyview (0.3.0-1.1+b1)
Bio++ Phylogenetic Viewer
bppsuite (2.2.0-0.1+b1)
Bio++ program suite
brig (0.95+dfsg-1)
BLAST Ring Image Generator
bwa (0.7.15-2+deb9u1)
Burrows-Wheeler Aligner
cafeobj (1.5.5-1+b1)
new generation algebraic specification and programming language
cafeobj-mode (1.5.5-1)
Emacs major mode for editing CafeOBJ source code
caffe-cpu (1.0.0~rc4-1)
Fast, open framework for Deep Learning (Meta)
caffe-tools-cpu (1.0.0~rc4-1)
Tools for fast, open framework for Deep Learning (CPU_ONLY)
caffe-tools-cuda (1.0.0~rc4-1) [contrib]
Tools for fast, open framework for Deep Learning (CUDA)
cain (1.10+dfsg-2)
simulations of chemical reactions
cain-examples (1.10+dfsg-2)
examples for cain
cain-solvers (1.10+dfsg-2)
solvers for cain
calculix-ccx (2.11-1+b1)
Three-Dimensional Structural Finite Element Program
calculix-cgx (2.11+dfsg-1+b1)
Calculix cgx is a 3-dimensional pre- and post-processor for fem
camitk-actionstatemachine (4.0.4-2)
pipeline replay application for the CamiTK library
camitk-config (4.0.4-2)
Computer Assisted Medical Intervention Tool Kit - config
camitk-imp (4.0.4-2)
workbench application for the CamiTK library
casacore-data-igrf (10-1)
International Geomagnetic Reference Field data for casacore
casacore-data-lines (0+git2016.11.26-2)
Table of spectral line frequencies for casacore
casacore-data-observatories (0+git2016.11.02-1)
Table of radio observatory coordinates for casacore
casacore-data-sources (2-2)
Table of ICRF reference source coordinates for casacore
casacore-data-tai-utc (1.1)
Difference table between TAI and UTC for casacore
casacore-tools (2.2.0-2)
Tools built with CASA
cassbeam (1.1-1+b1)
Cassegrain antenna modelling
cassiopee (1.0.5-1+b1 [amd64], 1.0.5-1 [arm64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el, s390x])
index and search tool in genomic sequences
cba (0.3.6-4.1+b2)
Continuous Beam Analysis
cbflib-bin (
utilities to manipulate CBF files
cbmc (5.6-1)
bounded model checker for C and C++ programs
cclib (1.3.1-1)
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [non-free]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.6-2)
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-3)
Constant DataBase indexing and retrieval tools for multi-FASTA files
cernlib (20061220+dfsg3-4.3+deb9u2)
balík CERNLIB na analýzu dát - metabalík na všeobecné účely
cernlib-core (20061220+dfsg3-4.3+deb9u2)
balík CERNLIB na analýzu dát - hlavné knižnice a programy
cernlib-extras (20061220+dfsg3-4.3+deb9u2)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3.1)
CERNLIB Monte Carlo libraries
cg3 (0.9.9~r11624-1+b3)
Tools for using the 3rd edition of Constraint Grammar (CG-3)
cgns-convert (3.3.0-4)
CFD General Notation System - Conversion tools
cgview (0.0.20100111-2)
Circular Genome Viewer
ch5m3d (1.2.5+dfsg-1)
create and visualize 3-dimensional drawings of simple molecules
chemical-structures (2.2.dfsg.0-12)
sada štruktúr molekúl v otvorených formátoch
chemps2 (1.8.3-2)
Executable to call libchemps2-2 from the command line
chemtool (1.6.14-1+b1)
program na kreslenie chemických štruktúr
chimeraslayer (20101212+dfsg1-1)
detects likely chimeras in PCR amplified DNA
circlator (1.4.1-1)
circularize genome assemblies
circos (0.69.4+dfsg-1)
plotter for visualizing data
circos-tools (0.22-1)
plotter for visualizing data - helper utilities
ckon (0.7.1-3+b3 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x], 0.7.1-3+b2 [mips64el])
automatic build tool for ROOT data analysis software
clearcut (1.0.9-1+b1)
extremely efficient phylogenetic tree reconstruction
clonalframe (1.2-5)
odvodenie mikroevolúcie baktérií pomocou multilocus sekvencovaných dát
clustalo (1.2.4-1)
všeobecný program na viacnásobné zarovnávanie sekvencií bielkovín
clustalw (2.1+lgpl-5)
globálne viacnásobné zarovnávanie sekvencií nukleotidov alebo peptidov
clustalx (2.1+lgpl-5)
balík na viacnásobné zarovnávanie sekvencií nukleových kyselín a bielkovín - grafické rozhranie
cluster3 (1.52a-1) [non-free]
Reimplementation of the Eisen-clustering software
cmor-tables (3.2-1)
MIP tables for the Climate Model Output Rewriter library
cmtk (3.3.1-1.1)
Computational Morphometry Toolkit
code-aster-gui (1.13.1-2)
Graphical user interface for Code_Aster - client
code-aster-run (1.13.1-2)
Graphical user interface for Code_Aster - server
code-saturne (4.3.3+repack-1)
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (4.3.3+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (4.3.3+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-doc (4.3.3+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - Documentation
code-saturne-include (4.3.3+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - includes
codonw (1.4.4-3+b1)
Correspondence Analysis of Codon Usage
coinor-cbc (2.8.12-1+b2)
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.15.10-3+b1)
Coin-or linear programming solver
coinor-csdp (6.1.1-1+b2)
A software package for semidefinite programming
coinor-libcbc3 (2.8.12-1+b2)
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.58.9-1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x], 0.58.9-1 [mips64el])
COIN-OR Cut Generation Library
coinor-libclp1 (1.15.10-3+b1)
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3v5 (2.9.15-4)
Coin-or collection of utility classes (binaries and libraries)
coinor-libflopc++0 (1.0.6-3.1+b2 [amd64, armel, armhf, i386, mips, mipsel, s390x], 1.0.6-3.1+b1 [ppc64el], 1.0.6-3.1 [arm64, mips64el])
Formulation of Linear Optimization Problems in C++
coinor-libosi1v5 (0.106.9-2+b1)
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.6.1-1+b2)
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-symphony (5.6.1-1+b2)
COIN-OR solver for mixed-integer linear programs
comet-ms (2014022-3+b2)
Tandem mass spectrometry (MS/MS) search engine
concavity (0.1+dfsg.1-1)
predictor of protein ligand binding sites from structure and conservation
connectome-workbench (1.2.3+git3-g7b83782-1)
brain visualization, analysis and discovery tool
conservation-code (20110309.0-5)
protein sequence conservation scoring tool
cp2k (4.1-1+b1)
Ab Initio Molecular Dynamics
cp2k-data (4.1-1)
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.4+dfsg-1+b1)
ESO data reduction pipeline for the AMBER instrument
cpl-plugin-amber-calib (4.3.4+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (5.3.11+dfsg-1)
ESO data reduction pipeline for the FORS1/2 instruments
cpl-plugin-fors-calib (5.3.11+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.15+dfsg-1+b1)
ESO data reduction pipeline for the GIRAFFE instrument
cpl-plugin-giraf-calib (2.15+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (1.8.21+dfsg-1)
ESO data reduction pipeline for the HAWK-I instrument
cpl-plugin-hawki-calib (1.8.21+dfsg-1)
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-kmos (1.4.0+dfsg-1)
ESO data reduction pipeline for the KMOS instrument
cpl-plugin-kmos-calib (1.4.0+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for KMOS
cpl-plugin-muse (1.6.2+dfsg-1)
ESO data reduction pipeline for the MUSE instrument
cpl-plugin-muse-calib (1.6.2+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for MUSE
cpl-plugin-naco (4.4.1+dfsg-3)
ESO data reduction pipeline for the NaCo instrument
cpl-plugin-naco-calib (4.4.1+dfsg-3) [contrib]
ESO data reduction pipeline NaCo calibration data downloader
cpl-plugin-uves (5.7.0+dfsg-1+b1)
ESO data reduction pipeline for the UVES instrument
cpl-plugin-uves-calib (5.7.0+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (3.1.7+dfsg-1+b1)
ESO data reduction pipeline for the VIMOS instrument
cpl-plugin-vimos-calib (3.1.7+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-visir (4.3.0+dfsg1-1+b1)
ESO data reduction pipeline for the VISIR instrument
cpl-plugin-visir-calib (4.3.0+dfsg1-1) [contrib]
ESO data reduction pipeline calibration data downloader for VISIR
cpl-plugin-xshoo (2.8.4+dfsg-3)
ESO data reduction pipeline for the XSHOOTER instrument
cpl-plugin-xshoo-calib (2.8.4+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for XSHOOTER
crac (2.5.0+dfsg-1)
integrated RNA-Seq read analysis
critterding (1.0-beta12.1-1.3+b1)
Evolving Artificial Life
ctsim (5.2.0-4)
Computed tomography simulator
ctsim-help (5.2.0-4)
Online help file for CTSim
cufflinks (2.2.1-3+b1) [non-free]
Transcript assembly, differential expression and regulation for RNA-Seq
cutadapt (1.12-2)
Clean biological sequences from high-throughput sequencing reads
cwltool (1.0.20170114120503-1)
Common workflow language reference implementation
daligner (1.0+20161119-1)
objavovanie lokálneho zarovnania medzi dlhými čítaniami postupností nukleotidov
dans-gdal-scripts (0.24-1+b1)
GDAL contributed tools by Geographic Information Network of Alaska
dascrubber (0~20160601-2)
alignment-based scrubbing pipeline for DNA sequencing reads
datalad (0.4.1-1)
data files crawler and data distribution
dawg (1.2-1+b1)
program to simulate the evolution of recombinant DNA sequences
dazzdb (1.0+20161112-2)
manage nucleotide sequencing read data
dcm2niix (1.0.20161101-1)
next generation DICOM to NIfTI converter
dcmtk (3.6.1~20160216-4)
sada nástrojov príkazového riadka OFFIS DICOM
Debian Astronomy Pure Blends Logo
dh-r (20161219)
Debian helper tools for packaging R libraries
dialign (2.2.1-8)
Segment-based multiple sequence alignment
dialign-tx (1.0.2-9)
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-9)
Segment-based multiple sequence alignment (data files)
dicomnifti (2.32.1-1+b1)
converts DICOM files into the NIfTI format
dicompyler (0.4.2-3)
radiation therapy research platform
dimbl (0.15-1)
Distributed Memory Based Learner
dindel (1.01+dfsg-4+b1)
determines indel calls from short-read data
discosnp (1.2.6-1+b2)
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-6)
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-6)
data files for predictor of disulfide bonds in proteins
dnaclust (3-4+b2)
tool for clustering millions of short DNA sequences
doris (4.06~beta2+dfsg-3+b1) [contrib]
Delft object-oriented radar interferometric software
dozzaqueux (3.50-1+b1)
simulator for chemical mixtures
dozzaqueux-data (3.50-1)
databases for chemical mixtures
dpuser (3.3+p1+dfsg-2)
Interactive language for handling numbers, strings, and matrices
drawxtl (5.5-3+b2)
crystal structure viewer
drslib (0.3.0a3-5)
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.4)
softvér na semidefinitné programovanie
dssp (2.2.1-3+b2)
protein secondary structure assignment based on 3D structure
dwgsim (0.1.11-3+b1)
short sequencing read simulator
dx (1:4.4.4-9+b1)
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.4.0-3)
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-3)
Program to read/write Arcinfo compressed E00 files
ea-utils (1.1.2+dfsg-4)
command-line tools for processing biological sequencing data
easychem (0.6-8+b1)
kvalitné kreslenie molekúl a 2D chemických vzorcov
ecaccess (4.0.1-1)
clients to access ECMWF facilities
ecopcr (0.5.0+dfsg-1)
estimate PCR barcode primers quality
edfbrowser (1.58-1+b1)
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-4+b1 [amd64], 0.2009-4 [arm64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el, s390x])
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-1.2)
grafický editor súborov príkazov Code Aster
eigensoft (6.1.4+dfsg-1+b1)
reduction of population bias for genetic analyses
elastix (4.8-10+b1)
toolbox for rigid and nonrigid registration of images
elk-lapw (4.0.15-2+b1)
All-Electron Density-Functional Electronic Structure Code
elki (0.7.1-3)
Data mining algorithm development framework
elki-dev (0.7.1-3)
Data mining algorithm development framework - development files
embassy-domainatrix (0.1.660-1)
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.660-1)
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.660-1)
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.660-1) [non-free]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0+dfsg-6)
európsky balík otvoreného softvéru pre molekulárnu biológiu
emboss-data (6.6.0+dfsg-6)
data files for the EMBOSS package
emboss-explorer (2.2.0-8)
web-based GUI to EMBOSS
emboss-lib (6.6.0+dfsg-6)
knižnice EMBOSS
engauge-digitizer (9.7+ds.1-1)
interactively extracts numbers from bitmap graphs or maps
ent (1.2debian-1+b1)
pseudorandom number sequence test program
epigrass (2.4.7-1)
vedecký nástroj na analýzu simulácií a scenárov v sieťovej epidemiológii
epsilon-bin (0.9.2+dfsg-2)
knižnica na vlnkovú komprimáciu obrazu - nástroje
ergo (3.5-1+b1)
Quantum chemistry program for large-scale calculations
eso-midas (15.09pl1.0-2+b2)
European Southern Observatory Munich Image Data Analysis System
eso-pipelines (1.2)
ESO VLT Instrument pipeline collection
esorex (3.12.3-1+b2)
Execution Tool for European Southern Observatory pipelines
esys-particle (2.3.4+dfsg1-4)
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.4-1.1+b1)
Binary tools to check, merge and read ETSF files
exonerate (2.4.0-2)
generic tool for pairwise sequence comparison
expeyes (4.2.1+dfsg-1)
hardware & software framework for developing science experiments
expeyes-clib (4.2.1+dfsg-1)
hardware & software framework for developing science experiments
falcon (1.8.6-1.1)
diploid-aware genome assembly of single-molecule sequencing reads
fastahack (0.0+20160702-1+b1)
utility for indexing and sequence extraction from FASTA files
fastaq (3.14.0-1)
FASTA and FASTQ file manipulation tools
fastdnaml (1.2.2-11+b1)
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix100+dfsg-1+b1)
faster version of pedigree programs of Linkage
fastml (3.1-3)
maximum likelihood ancestral amino-acid sequence reconstruction
fastqc (0.11.5+dfsg-6)
quality control for high throughput sequence data
fastqtl (2.184+dfsg-5)
Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
fasttree (2.1.9-1)
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.14-3)
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1+b1)
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.40-1)
Pipe-oriented frontend to Gnuplot
ffindex (
simple index/database for huge amounts of small files
figtree (1.4.2+dfsg-2)
graphical phylogenetic tree viewer
filo (1.1.0-3+b1)
FILe and stream Operations
fitgcp (0.0.20150429-1)
fitting genome coverage distributions with mixture models
fitscut (1.4.4-4+b3)
Extract cutouts from FITS image format files
fitsh (0.9.2-1+b1)
Software package for astronomical image processing
fitspng (0.3.5-1+b1)
konvertor FITS na PNG
fitsverify (4.18-1+b1)
FITS File Format-Verification Tool
fityk (1.3.0-1)
general-purpose nonlinear curve fitting and data analysis
flexbar (2.50-2+b1)
flexible barcode and adapter removal for sequencing platforms
flextra (5.0-6)
Trajectory model for tracing air transport phenomena
fml-asm (0.1-2+b1)
tool for assembling Illumina short reads in small regions
foma-bin (0.9.18+r243-1+b2)
Xerox-compatible finite-state compiler - library
form (4.1-1)
Symbolic manipulation system
fractalnow (0.8.1-1.1+b1)
Fast, advanced fractal generator
Free42 is a re-implementation of the HP-42S calculator
freecad (0.16+dfsg2-3)
rozšíriteľný open source program na CAx - alfa verzia
freecontact (1.0.21-5)
fast protein contact predictor
freediams (0.9.4-1+b1)
pharmaceutical drug prescription and interaction manager
freemedforms-common-resources (0.9.4-1)
common data for the FreeMedForms project applications
freemedforms-emr (0.9.4-1+b1)
electronic medical record manager
freemedforms-emr-resources (0.9.4-1)
data for the FreeMedForms EMR
freemedforms-freedata (0.9.4-1)
free extra-data for the FreeMedForms project
freemedforms-libs (0.9.4-1+b1)
common libs for the FreeMedForms project
freemedforms-project (0.9.4-1)
FreeMedForms project
freemedforms-theme (0.9.4-1)
theme for the FreeMedForms project
frog (0.13.7-1)
tagger and parser for natural languages (runtime)
frogdata (0.13-1)
Data files for Frog
fsa (1.15.9+dfsg-3)
Fast Statistical Alignment of protein, RNA or DNA sequences
fsm-lite (1.0-2)
frekvenčné dolovanie podreťazcov - lite
ftools-fv (5.4+dfsg-2)
Tool for viewing and editing FITS format files
ftools-pow (5.4+dfsg-2+b1)
Curve plotting and image display interface tool
funtools (1.4.7-1)
Minimal buy-in FITS utility package
fxt-tools (0.3.2-2+b1)
Multithreaded tracing library
g3data (1:1.5.3-2.1+b1)
extract data from scanned graphs
gabedit (2.4.8-3+b1)
grafické používateľské rozhranie k balíkom Ab Initio
galileo (0.5.1-4)
Utility to securely synchronize a Fitbit device with the Fitbit web service
galileo-daemon (0.5.1-4)
Utility to securely synchronize a Fitbit device - daemon
gamgi (0.17.1-1+b1)
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17.1-1)
General Atomistic Modelling Graphic Interface (data)
garli (2.1-1)
phylogenetic analysis of molecular sequence data using maximum-likelihood
garli-examples (2.1-1)
phylogenetic analysis of molecular sequence data using maximum-likelihood (examples)
garlic (1.6-1.1+b2)
program na vizualizáciu biomolekúl
gasic (0.0.r19-1)
genome abundance similarity correction
gausssum (
parse and display Gaussian, GAMESS, and etc's output
gazebo7 (7.3.1+dfsg-3)
Open Source Robotics Simulator - Binaries
gazebo7-common (7.3.1+dfsg-3)
Open Source Robotics Simulator - Shared files
gazebo7-plugin-base (7.3.1+dfsg-3)
Open Source Robotics Simulator - base plug-ins
gbrowse (2.56+dfsg-2)
GMOD Generic Genome Browser
gbrowse-calign (2.56+dfsg-2)
CAlign helper
gbrowse-data (2.56+dfsg-2)
Sample data to use GBrowse
gbutils (5.6.8-1+b1)
utilities for command line econometrics
gchempaint (0.14.15-1+deb9u1)
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.15-1+deb9u1)
odľahčený vizualizátor kryštálových štruktúr
gcu-bin (0.14.15-1+deb9u1)
chemické nástroje GNOME (pomocné aplikácie)
gcx (1.3-1.1+b2)
astronomical image processing and photometry gtk+ application
gdal-bin (2.1.2+dfsg-5)
Geospatial Data Abstraction Library - pomocné programy
gdis (0.90-5+b1)
prehliadač modelov molekúl a kryštálov
gdis-data (0.90-5)
molecular and crystal model viewer (data files)
gdl-astrolib (2016.11.10+dfsg-1)
Low-level astronomy software for GDL
gdl-coyote (2016.11.13-1)
GDL library from D. Fannings IDL courses
gdl-mpfit (1.84+2016.05.19-1)
Robust non-linear least squares curve fitting for GDL
gdpc (2.2.5-6)
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-6)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11)
[fyzika] nástroj detektora častíc na popis a simuláciu
geant321-data (1:3.21.14.dfsg-11)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-10+b1)
prehliadač periodickej tabuľky
genometools (1.5.9+ds-4)
versatile genome analysis toolkit
genometools-common (1.5.9+ds-4)
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-5)
suite to plan genetic cloning
geographiclib-tools (1.46-2+b1)
C++ library to solve some geodesic problems -- tools
geotiff-bin (1.4.2-2+b1)
GeoTIFF (geografic enabled TIFF) library -- tools
gerris (20131206+dfsg-17)
Fluid Flow Solver
getdata (0.2-1)
management of external databases
gff2aplot (2.0-8+b1)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-5)
vytvorí grafický výstup v PostScripte zo súborov GFF
gfsview (20121130+dfsg-4)
graphical viewer for Gerris simulation files
gfsview-batch (20121130+dfsg-4)
batch-version of viewer for Gerris simulation files
ghkl (
diffractometer computation control application
giella-core (0.1.1~r129227+svn121148-1)
GTCORE files for building Giellatekno language packages
giella-sme (0.0.20150917~r121176-1)
Giellatekno single language data for North Saami
giella-sme-dev (0.0.20150917~r121176-1)
Giellatekno single language data for North Saami (dev extras)
giira (0.0.20140625-1)
RNA-Seq driven gene finding incorporating ambiguous reads
ginga (2.6.1-2)
Astronomical image viewer
ginkgocadx (3.8.4-1)
softvér na zobrazovanie v medicíne a kompletný prehliadač DICOM
glam2 (1064-3+b1)
gapped protein motifs from unaligned sequences
gliese (3.0.95-2) [non-free]
stellar data set from the Third Catalogue of Nearby Stars
glueviz (0.9.1+dfsg-1)
Linked data visualization
gmap (2017-01-14-1) [non-free]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (5.3.1+dfsg-2+b1)
Generic Mapping Tools
gmt-common (5.3.1+dfsg-2)
Generic Mapping Tools - Architecture-independent files
gmt-dcw (1.1.2-2)
Digital Chart of the World (DCW) for GMT
gmt-gshhg (2.3.6-2)
Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
gmt-gshhg-full (2.3.6-2)
Full resolution coastlines for the Generic Mapping Tools
gmt-gshhg-high (2.3.6-2)
High resolution coastlines for the Generic Mapping Tools
gmt-gshhg-low (2.3.6-2)
Low resolution coastlines for the Generic Mapping Tools
gnuastro (0.2.33-1)
GNU Astronomy Utilities programs
gpaw (1.1.0-1+b2)
DFT and beyond within the projector-augmented wave method
gpaw-data (0.9.20000-1)
gpaw datasets/setups
gperiodic (2.0.10-7+b1)
aplikácia periodickej tabuľky
gpx (2.5.2-1+b1)
Gcode to x3g conversion post processor
gpx2shp (0.71.0-4+b1)
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (
kontrolér Funcube Dongle Pro Plus pre GNU Radio
graphlan (1.1-2)
circular representations of taxonomic and phylogenetic trees
grass (7.2.0-2)
grass-core (7.2.0-2)
GRASS GIS - základné komponenty
grass-gui (7.2.0-2)
GRASS GIS - grafické používateľské rozhrania
gravit (0.5.1+dfsg-2+b2)
visually stunning gravity simulator
gravit-data (0.5.1+dfsg-2)
data files for Gravit
gri (2.12.23-10)
a language for scientific illustration
grinder (0.5.4-1)
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (2016.1-2)
Molecular dynamics simulator, with building and analysis tools
gromacs-data (2016.1-2)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (2016.1-2)
simulátor dynamiky molekúl - spustiteľné súbory na paralelizáciu MPICH
gromacs-openmpi (2016.1-2)
Molecular dynamics sim, binaries for OpenMPI parallelization
gubbins (2.2.0-1)
phylogenetic analysis of genome sequences
gvb (1.4-1)
vizuálny simulátor jedno a dvojrozmerných vibrácií
gwama (2.2.2+dfsg-1)
Genome-Wide Association Meta Analysis
gwyddion (2.47-1)
nástroj na vizualizáciu a analýzu mikroskopie skenovacej sondy
gwyddion-common (2.47-1)
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.47-1)
plugins for Gwyddion SPM analysis tool
gyoto (1.2.0-2)
General relativistic geodesic integration and ray-tracing
gyoto-bin (1.2.0-2)
General relativistic ray-tracing command-line interface
h5utils (1.12.1-6+b1)
HDF5 files visualization tools
harminv (1.4-1+b2)
extraction of complex frequencies and amplitudes from time series
harvest-tools (1.3-1)
archiving and postprocessing for reference-compressed genomic multi-alignments
hdf-compass (0.6.0-1)
viewer for HDF5 and related formats
hdf5-helpers (1.10.0-patch1+docs-3+deb9u1)
HDF5 (Hierarchical Data Format 5) - pomocné nástroje
hdf5-tools (1.10.0-patch1+docs-3+deb9u1)
HDF5 (Hierarchical Data Format 5) - nástroje
herisvm (0.7.0-1)
machine learning tools for classification algorithms
hfst (3.10.0~r2798-3)
Helsinki Finite-State Transducer Technology
hfst-ospell (0.4.0~r4643-4+b2)
Spell checker library and tool based on HFST
hhsuite (3.0~beta2+dfsg-3)
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (3.0~beta2+dfsg-3)
sensitive protein sequence searching based on HMM-HMM alignment (data)
hilive (0.3-2)
realtime alignment of Illumina reads
hisat2 (2.0.5-1)
graph-based alignment of short nucleotide reads to many genomes
hmmer (3.1b2+dfsg-5)
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2-13)
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2-13)
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-2+b1)
vypíše dátum v latinčine
horae (071~svn537-2.1) [contrib]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.3-1+b5)
HPC Challenge benchmark
htcondor (8.4.11~dfsg.1-1)
distribuovaný systém na správu pracovnej množiny
hyphy-common (2.2.7+dfsg-1)
Hypothesis testing using Phylogenies (common files)
hyphy-mpi (2.2.7+dfsg-1+b2)
Hypothesis testing using Phylogenies (MPI version)
hyphy-pt (2.2.7+dfsg-1+b2)
Hypothesis testing using Phylogenies (pthreads version)
hyphygui (2.2.7+dfsg-1+b2)
Hypothesis testing using Phylogenies (GTK+ gui)
idba (1.1.3-1)
iterative De Bruijn Graph De Novo short read assembler for transcriptome
ifeffit (2:1.2.11d-10.1) [contrib]
Interactive XAFS analysis program
ifrit (4.1.2-5+b5)
mocný nástroj na vizualizáciu 3-rozmerných sád dát
igv (2.3.90+dfsg-1) [non-free]
Integrative Genomics Viewer
imagej (1.51i+dfsg-2)
Image processing program inspired by NIH Image
imagevis3d (3.1.0-5)
desktop volume rendering application for large data
imview (1.1.9c-17+b1)
Image viewing and analysis application
indelible (1.03-2+b1)
powerful and flexible simulator of biological evolution
indigo-utils (1.1.12-2)
Organic Chemistry Toolkit Utilities
infernal (1.1.2-1)
inference of RNA secondary structural alignments
ipig (0.0.r5-2)
integrating PSMs into genome browser visualisations
iqtree (1.5.3+dfsg-2)
efficient phylogenetic software by maximum likelihood
irstlm (6.00.05-2)
IRST Language Modeling Toolkit
ismrmrd-schema (1.3.3-1)
schema for ISMRMRD
ismrmrd-tools (1.3.3-1+b1)
command-line tools for ISMRMRD
itksnap (3.4.0-2+b3)
semi-automatic segmentation of structures in 3D images
iva (1.0.8+ds-1)
iterative virus sequence assembler
jaligner (1.0+dfsg-4)
Smith-Waterman algorithm with Gotoh's improvement
jblas (1.2.3-6)
fast linear algebra library for Java
jellyfish (2.2.6-1+b1)
count k-mers in DNA sequences
jellyfish-examples (2.2.6-1+b1)
count k-mers in DNA sequences (examples for testing)
jemboss (6.6.0+dfsg-6)
graphical user interface to EMBOSS
jmodeltest (2.1.10+dfsg-5)
HPC selection of models of nucleotide substitution
jmol (14.6.4+2016.11.05+dfsg1-3)
Molecular Viewer
jsamp (1.3.5-1)
Java Simple Application Messaging Protocol tool for VO
julia (0.4.7-6+b3)
high-performance programming language for technical computing
julia-common (0.4.7-6)
high-performance programming language for technical computing (common files)
jupyter-notebook (4.2.3-4)
Jupyter interactive notebook
kalign (1:2.03+20110620-3)
Global and progressive multiple sequence alignment
kalzium (4:16.08.3-1)
periodická tabuľka a chemické nástroje
kalzium-data (4:16.08.3-1)
Kalzium - dátové súbory
khmer (2.0+dfsg-10)
in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common (2.0+dfsg-10)
common files for the khmer project tools
kineticstools (0.6.1+20161222-1)
detection of DNA modifications
kineticstools-data (0.6.1+20161222-1)
detection of DNA modifications -- data files
king-probe (2.13.110909-2)
Evaluate and visualize protein interatomic packing
kissplice (2.4.0-p1-1)
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1+b2)
automatic sorting of the samples (spikes) into clusters
kmc (2.3+dfsg-5)
count kmers in genomic sequences
kmer (0~20150903+r2013-3)
suite of tools for DNA sequence analysis
konclude (0.6.2~dfsg-3+b1)
tableau-based description logic reasoner for the semantic web
kraken (0.10.5~beta-2+b1)
assigning taxonomic labels to short DNA sequences
kst (2.0.3-5+b4 [mips], 2.0.3-5+b3 [amd64, arm64, armel, armhf, i386, mips64el, mipsel, ppc64el, s390x])
scientific data plotting tool
kst-data (2.0.3-5)
set of data files for kst
kstars (4:16.08.3-2)
planetárium pre KDE
kstars-data (4:16.08.3-2)
planetárium KStars pre KDE - dátové súbory
kstars-data-extra-tycho2 (1.1r1-9.1) [non-free]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4.3+deb9u2)
CERNLIB data analysis suite - KUIP terminal emulator
lambda-align (1.0.1-2)
Local Aligner for Massive Biological DatA
lammps (0~20161109.git9806da6-7)
Molecular Dynamics Simulator
last-align (830-1)
genome-scale comparison of biological sequences
lbt (1.2.2-6)
converts from LTL formulas to Büchi automata
leaff (0~20150903+r2013-3)
biological sequence library utilities and applications
lefse (1.0+20160802-1)
determine features of organisms, clades, taxonomic units, genes
lhapdf-pdfsets-minimal (5.9.1-5)
Minimal PDF Sets of LHAPDF
libadios-bin (1.11.0-1+b1)
ADIOS Adaptable IO system for simulations - binaries
libapertium3-3.4-0 (3.4.0~r61013-5+b1)
Apertium - zdieľaná knižnica
libball1.4-data (1.4.3~beta1-3)
Biochemical Algorithms Library (data files)
libcamitk4 (4.0.4-2)
Computer Assisted Medical Intervention Tool Kit - runtime
libcassie1v5 (1.0.5-1+b1 [amd64], 1.0.5-1 [arm64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el, s390x])
library implementating search algorithms
libcg3-0 (0.9.9~r11624-1+b3)
Runtime for CG-3
libclhep2.1v5 (
CLHEP: A Class Library for High Energy Physics
libdivsufsort3 (2.0.1-2)
fast suffix array construction
libdynamicedt3d1.8 (1.8.1+dfsg-1)
Incrementally updatable Euclidean distance transform library
libeccodes-data (2.0.2-5)
GRIB and BUFR enecoding/encoding software library - data
libgeotiff-epsg (1.4.2-1) [non-free]
GeoTIFF library -- EPSG Geodetic Parameter Dataset
libgfsgl0 (20121130+dfsg-4)
graphical viewer for Gerris simulation files. Shared library
libghemical-data (3.0.0-4.1)
Molecular Modelling Library (data files)
libgnuradio-fcdproplus3.7.10 (
GNU Radio - kontrolér Funcube Dongle Pro Plus - dynamické súbory
libgrits5 (0.8.1-2)
Grits is a Virtual Globe library
libgtkdatabox-0.9.3-0-glade (1:
Gtk+ library to display large amounts of numerical data (glade API)
libgtkdatabox-0.9.3-0-libglade (1:
Gtk+ library to display large amounts of numerical data (glade lib)
libgyoto6 (1.2.0-2)
Gyoto framework main library an standard plug-in
libhdf5-jni (1.10.0-patch1+docs-3+deb9u1)
native library used by libhdf5-java
libhfst45 (3.10.0~r2798-3)
Helsinki Finite-State Transducer Technology Libraries
libhfstospell5 (0.4.0~r4643-4+b2)
HFST spell checker runtime libraries
libismrmrd1.3 (1.3.3-1+b1)
ISMRM Raw Data format (ISMRMRD)
liblas-bin (1.8.1-3+b1)
ASPRS LiDAR data translation toolset
liblemon-utils (1.3.1+dfsg-1+b2)
Library for Efficient Modeling and Optimization in Networks (utilities)
libliggghts3 (3.5.0+repack1-10)
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (2.1.0+dfsg-2)
samostatné aplikácie pre LIBLINEAR
liblorene-debian1 (0.0.0~cvs20161116+dfsg-1)
liblorene shared library
liblorene-export-debian0 (0.0.0~cvs20161116+dfsg-1)
liblorene_export shared library
liblorenef77-debian1 (0.0.0~cvs20161116+dfsg-1)
liblorenef77 shared library
liblttoolbox3-3.3-0v5 (3.3.3~r68466-2+b1)
Shared library for lttoolbox
libncarg-bin (6.3.0-13)
NCAR command-language library - development tools
libncarg-data (6.3.0-13)
NCAR command-language library - Data
libngram-tools (1.3.0-1)
OpenGRM n-gram Language Modeling toolkit
libocas-tools (0.97+dfsg-3)
Standalone applications implementing the OCAS solver
liboctomap1.8 (1.8.1+dfsg-1)
3D occupancy grid mapping approach library for mapping
liboctovis1.8 (1.8.1+dfsg-1)
Visualization library for OctoMap
libopenfoam (4.1+dfsg1-1)
Set of programs for Computational Fluid Dynamics (CFD). Libraries
libopengm-bin (2.3.6+20160905-1+b2)
command line tools for OpenGM
libotb (5.8.0+dfsg-3)
ORFEO Toolbox library metapackage
libotb-apps (5.8.0+dfsg-3)
Plugins for ORFEO Toolbox applications
libpwiz-tools (3.0.9393-1+b2)
ProteoWizard command line tools
libqgis-customwidgets (2.14.11+dfsg-3+deb9u1)
QGIS custom widgets for Qt Designer
libqgis-server2.14.11 (2.14.11+dfsg-3+deb9u1)
QGIS - shared server library
libqtpropertybrowser4 (4.0.4-2)
Qt Property Browser Library - runtime
librasterlite2-1 (1.0.0~rc0+devel1-4)
library for huge raster coverages using a SpatiaLite DBMS
libsilo-bin (4.10.2-6+b3)
Utilities to manipulate libsilo files
libsimgrid3.14 (3.14.159-2)
Toolkit for scalable simulation of distributed applications
libstxxl1v5 (1.4.1-2+b1)
C++ Standard Template Library for extra large datasets
libvcflib-tools (1.0.0~rc1+dfsg1-3)
C++ library for parsing and manipulating VCF files (tools)
libxy-bin (1.3-1.1+b1)
xylib - utilities
libyade (2017.01a-8)
Platform for discrete element modeling. Libraries
liggghts (3.5.0+repack1-10)
Open Source DEM Particle Simulation Software.
litl-tools (0.1.8-2+b2)
Lightweight Trace Library - tools
logcentral (2.7-1.1+b1)
Logging service for distributed applications
logcentral-tools (2.7-1.1+b1)
Logging service for distributed applications
logol (1.7.5-1)
Pattern matching tool using Logol language
logol-bin (1.7.5-1)
Pattern matching tool using Logol language
loki (
looptools (2.8-1+b1)
Integral Evaluator of One-loop Feynman Diagram
lorene (0.0.0~cvs20161116+dfsg-1)
framework for numerical relativity
lorene-codes-src (0.0.0~cvs20161116+dfsg-1)
source files of LORENE-based codes
ltrsift (1.0.2-7)
postprocessing and classification of LTR retrotransposons
ltrsift-examples (1.0.2-7)
example data for LTRsift
lttoolbox-dev (3.3.3~r68466-2+b1)
Development tools and library for lttoolbox
lutefisk (1.0.7+dfsg-4+b1)
de novo interpretation of peptide CID spectra
macs (
Model-based Analysis of ChIP-Seq on short reads sequencers
macsyfinder (1.0.2-3)
detection of macromolecular systems in protein datasets
maffilter (1.1.0-1+dfsg-2+b2)
process genome alignment in the Multiple Alignment Format
maffilter-examples (1.1.0-1+dfsg-2)
process genome alignment in the Multiple Alignment Format (example data)
mafft (7.307-1)
Multiple alignment program for amino acid or nucleotide sequences
mapdamage (2.0.6+dfsg-2)
tracking and quantifying damage patterns in ancient DNA sequences
mapsembler2 (2.2.3+dfsg-3+b1)
bioinformatics targeted assembly software
maq (0.7.1-7)
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-7+b1)
graphical read alignment viewer for short gene sequences
mash (1.1.1-2)
fast genome and metagenome distance estimation using MinHash
massxpert (3.6.1-1)
linear polymer mass spectrometry software
massxpert-data (3.6.1-1)
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2) [contrib]
IO library for the GDF -- Matlab interface
maude (2.7-2+b1)
high-performance logical framework
mauve-aligner (2.4.0+4734-3)
multiple genome alignment
mayavi2 (4.5.0-1)
scientific visualization package for 2-D and 3-D data
mbt (3.2.16-1+b1)
memory-based tagger-generator and tagger
mbtserver (0.11-1+b1)
Server extensions for the MBT tagger
meep (1.3-4+b1)
software package for FDTD simulation
meep-lam4 (1.3-2+b1)
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi-default (1.3-3+b4 [s390x], 1.3-3+b3 [amd64, arm64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el])
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.3-4+b1)
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.3-3+b3 [amd64, arm64, armel, armhf, i386, mips, mips64el, mipsel, ppc64el], 1.3-3+b2 [s390x])
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-2+b1)
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-2)
grafické používateľské rozhranie na výpočet teploty topenia duplexu nukleových kyselín
merkaartor (0.18.3+ds-1+b1)
editor máp pre
meryl (0~20150903+r2013-3)
in- and out-of-core kmer counting and utilities
metaphlan2 (2.6.0+ds-2)
Metagenomic Phylogenetic Analysis
metaphlan2-data (2.6.0+ds-2)
data package for Metagenomic Phylogenetic Analysis
metastudent (2.0.1-4)
predictor of Gene Ontology terms from protein sequence
metastudent-data (2.0.1-2)
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-2)
predictor of Gene Ontology terms from protein sequence - data #2
metview (4.8.0-4)
Interactive data visualization and analysis environment,
metview-data (4.8.0-4)
Data needed for the Metview data analysis environment
mgltools-bhtree (1.5.7-1) [non-free]
Bhtree library extension module
mgltools-cadd (1.5.7-1) [non-free]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1+cvs.20140424-1) [non-free]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7-1) [non-free]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7-1) [non-free]
Python library for geometric analyses
mgltools-mglutil (1.5.7-2) [non-free]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7~rc1+cvs.20140424-1) [non-free]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7-1) [non-free]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7-1) [non-free]
Opengltk Python extension
mgltools-pyautodock (1.5.7-1) [non-free]
Python implementation of autodock
mgltools-pybabel (1.5.7-1) [non-free]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7-1) [non-free]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7-1) [non-free]
Python-based viewer of molecular structures
mgltools-sff (1.5.6~rc3~cvs.20120206-1) [non-free]
Simple Force Field for Python
mgltools-support (1.5.7-1) [non-free]
Update mechanism of MGLTools
mgltools-symserv (1.5.7-1) [non-free]
Symetry server
mgltools-utpackages (1.5.7-1) [non-free]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7-1) [non-free]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7-1) [non-free]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7-1) [non-free]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7-1) [non-free]
Volume rendering Python package
mgltools-webservices (1.5.7-1) [non-free]
webservices for components of autodocktools
mhap (2.1.1+dfsg-1)
locality-sensitive hashing to detect long-read overlaps
mia-doctools (2.4.3-5)
Helper scripts for run-time document creation
mia-tools (2.4.3-5)
Command line tools for gray scale image processing
mia-viewit (1.0.4-1+b1)
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.13-1)
Tools for landmark picking in 3D volume data sets
microbegps (1.0.0-2)
explorative taxonomic profiling tool for metagenomic data
microbiomeutil (20101212+dfsg1-1)
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg1-1)
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (4.2.1+dfsg-1)
hardware & software framework to learn microcontrollers
minc-tools (2.3.00+dfsg-1.1+b1)
MNI medical image format tools
minia (1.6906-1+b2)
short-read biological sequence assembler
miniasm (0.2+dfsg-2+b1)
ultrafast de novo assembler for long noisy DNA sequencing reads
minimap (0.2-3+b1)
tool for approximate mapping of long biosequences such as DNA reads
minisat (1:2.2.1-5+b3)
rýchly a nenáročný riešiteľ SAT
minisat+ (1.0-3)
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5+b3)
Transitional package for minisat
virtuálny balík poskytovaný balíkom minisat
mipe (1.1-5)
Tools to store PCR-derived data
mira-assembler (4.9.6-2)
Whole Genome Shotgun and EST Sequence Assembler
mira-rfam-12s-rrna (4.9.6-2)
extract of RFAM 12 rRNA database
missfits (2.8.0-1+b1)
Basic maintenance and packaging tasks on FITS files
mlpack-bin (2.1.1-1)
intuitive, fast, scalable C++ machine learning library (binaries)
mlv-smile (1.47-4+b1)
Find statistically significant patterns in sequences
mmass (5.5.0-5)
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-5)
Mass spectrometry tool for proteomics - extension modules
mobyle (1.5.5+dfsg-2)
Web portal that provides web forms for command-line software
mobyle-programs (5.1.2-1)
Program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-2)
program tutorials for the mobyle portal
mobyle-utils (1.5.5+dfsg-2)
binary tools used by Mobyle
mocassin (2.02.72-2)
MOnte CArlo SimulationS of Ionised Nebulae
mocassin-benchmarks (2.02.72-2)
benchmarks for the photoionisation code MOCASSIN
mocassin-data (2.02.72-2)
atomic and optical data for the photoionisation code MOCASSIN
mocassin-examples (2.02.72-2)
Examples for the photoionisation code MOCASSIN
molds (0.3.1-1+b5 [amd64, arm64, armhf, i386], 0.3.1-1+b4 [ppc64el], 0.3.1-1 [mips64el])
Semi-empirical electronic structure and molecular dynamics
mona (1.4-17-1+b1)
theorem prover based on automata
montage (4.0+dfsg-3+b3)
Toolkit for assembling FITS images into mosaics
montage-gridtools (4.0+dfsg-3+b3)
Create files to run montage on the grid
montecarlo-base (20061220+dfsg3-3.1)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3.1)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6+b1)
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.4-2)
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.4-2)
Multi-OpenRobot Simulation Engine
mothur (
sequence analysis suite for research on microbiota
mothur-mpi (
mpi-enabled binary for mothur
mpb (1.5-2+b7 [s390x], 1.5-2+b5 [amd64, armel, armhf, i386, mips, mipsel], 1.5-2+b4 [arm64, ppc64el], 1.5-2+b3 [mips64el])
MIT Photonic-Bands
mpb-mpi (1.5-2+b7 [s390x], 1.5-2+b5 [amd64, armel, armhf, i386, mips, mipsel], 1.5-2+b4 [arm64, ppc64el], 1.5-2+b3 [mips64el])
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.5-2)
MIT Photonic-Bands initialisation files
mpqc (2.3.1-18+deb9u1)
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-18+deb9u1)
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-18+deb9u1)
Massively Parallel Quantum Chemistry Program (support tools)
mpqc3 (0.0~git20170114-4)
Massively Parallel Quantum Chemistry Program
mpqc3-data (0.0~git20170114-4)
Massively Parallel Quantum Chemistry Program (data files)
mrbayes (3.2.6+dfsg-1+b4)
Bayesian Inference of Phylogeny
mrbayes-mpi (3.2.6+dfsg-1+b4)
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.1.0-1)
medical image file conversion utility
mricron (0.20140804.1~dfsg.1-2+b1)
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20140804.1~dfsg.1-2)
data files for MRIcron
mrpt-apps (1:1.4.0-7+b1 [mips, mips64el, mipsel], 1:1.4.0-7 [amd64, arm64, armel, armhf, i386, ppc64el, s390x])
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common (1:1.4.0-7)
Mobile Robot Programming Toolkit - Example datasets and files
mrs (6.0.5+dfsg-2+b2)
Information Retrieval System for Biomedical databanks
mssstest (3.0-5) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23+dfsg-2)
Efficient sequence alignment of full genomes
munipack (0.5.7-2)
Astronomical photometry software package
munipack-cli (0.5.7-2)
Command line interface of Munipack
munipack-core (0.5.7-2)
Core routines of Munipack
munipack-gui (0.5.7-2)
Graphical user interface of Munipack
murasaki (1.68.6-6+b4)
homology detection tool across multiple large genomes
murasaki-common (1.68.6-6)
homology detection tool across multiple large genomes (common files)
murasaki-mpi (1.68.6-6+b4)
homology detection tool across multiple large genomes (MPI-version)
muscle (1:3.8.31+dfsg-2)
Multiple alignment program of protein sequences
music-bin (1.0.7-1.3)
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.3-1)
multiple structural alignment of proteins
mustang-testdata (3.2.3-1)
multiple structural alignment of proteins, test data
nanopolish (0.5.0-1+b1)
consensus caller for nanopore sequencing data
nast-ier (20101212+dfsg1-1+b1)
NAST-based DNA alignment tool
nastran (0.1.95-1) [non-free]
NASA Structural Analysis System
ncbi-blast+ (2.6.0-1)
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.6.0-1)
NCBI Blast legacy call script
ncbi-entrez-direct (6.10.20170123+ds-1)
NCBI Entrez utilities on the command line
ncbi-epcr (2.3.12-1-4)
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20170106-2)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-3+b1)
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20170106-2)
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20170106-2)
knižnice NCBI pre biologické aplikácie (nástroje založené na X)
ncl-ncarg (6.3.0-13)
NCAR Command Language and NCAR graphics
ncl-tools (2.1.18+dfsg-2+b1)
tools to deal with NEXUS files
nco (4.6.3-1+b1)
Command-line operators to analyze netCDF files
ncoils (2002-4+b1)
coiled coil secondary structure prediction
ncview (2.1.7+ds-1+b2)
X11 visual browser for NetCDF format files
neat (2.0-2)
Nebular Empirical Analysis Tool
neobio (0.0.20030929-2)
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:
programy na čítanie a zapisovanie súborov NetCDF
neurodebian (0.37.6)
neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring (0.37.6)
neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop (0.37.6)
neuroscience-oriented distribution - desktop integration
neurodebian-dev (0.37.6)
neuroscience-oriented distribution - development tools
neurodebian-popularity-contest (0.37.6)
neuroscience-oriented distribution - popcon integration
nifti2dicom (0.4.11-1+b3)
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.11-1)
data files for nifti2dicom
njplot (2.4-7)
program na kreslenie fylogenetických stromov
norsnet (1.0.17-2)
tool to identify unstructured loops in proteins
norsp (1.0.6-2)
predictor of non-regular secondary structure
numdiff (5.8.1-2+b1)
Compare similar files with numeric fields
nutsqlite (
Dietary nutrition analysis software
oar-common (2.5.7-3)
OAR batch scheduler common package
oar-node (2.5.7-3)
OAR batch scheduler node package
oar-server (2.5.7-3)
OAR batch scheduler server package
oar-server-mysql (2.5.7-3)
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.7-3)
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.7-3)
OAR batch scheduler user package
oar-user-mysql (2.5.7-3)
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.7-3)
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.7-3)
OAR batch scheduler visualization tool package
obdgpslogger (0.16-1.3+b1)
suite of tools to log OBDII and GPS data
oce-draw (0.17.2-2)
CAE platforma OpenCASCADE Community Edition - zdieľaná knižnica
octave-bart (0.4.00-1)
Octave bindings for BART
octave-biosig (1.3.0-2.2)
Octave bindings for BioSig library
octave-gdf (0.1.2-2+b8 [mips], 0.1.2-2+b7 [amd64, armel, armhf, i386, mipsel, s390x], 0.1.2-2+b5 [ppc64el], 0.1.2-2+b4 [arm64], 0.1.2-2+b2 [mips64el])
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-5)
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (
toolbox for vision research -- Octave bindings
octomap-tools (1.8.1+dfsg-1)
Tools for 3D occupancy grid mapping
octovis (1.8.1+dfsg-1)
Visualization tool for OctoMap
odil (0.7.3-1)
C++11 library for the DICOM standard (application)
ogdi-bin (3.2.0+ds-2)
Open Geographic Datastore Interface - nástroje
openbabel (2.3.2+dfsg-3)
nástroje chemickej sady nástrojov - nástroje príkazového riadka
openbabel-gui (2.3.2+dfsg-3)
sada chemických nástrojov - grafické používateľské rozhranie
opencaster (3.2.2+dfsg-1.1+b1)
MPEG2 transport stream data generator and packet manipulator
openfoam (4.1+dfsg1-1)
Set of programs for Computational Fluid Dynamics (CFD). Binaries
openfoam-examples (4.1+dfsg1-1)
Set of programs for Computational Fluid Dynamics (CFD). Examples
openmolar (1.0.15-gd81f9e5-1)
dental practice management software
openmx (3.7.6-1+b6)
package for nano-scale material simulations
openmx-data (3.7.6-1)
package for nano-scale material simulations (data)
openrocket (15.03)
Model Rocket Simulator
opensesame (0.27.4-2.1)
graphical experiment builder for the social sciences
openturns-examples (1.7-3)
examples of OpenTURNS functionalities
openturns-validation (1.7-3)
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-6)
3D simulátor vesmíru
openuniverse-common (1.0beta3.1+dfsg-6)
3D Universe Simulator data files
optgeo (2.23-1+b1)
simulator for geometrical optics
opticalraytracer (3.2-1.1)
Virtual lens design workshop
origami (1.2.7+really0.7.4-1.1)
command-line management tool for Folding @ Home clients
orthanc (1.2.0+dfsg-1)
Lightweight, RESTful DICOM server for medical imaging
orthanc-dicomweb (0.3+dfsg-1+b2)
Plugin to extend Orthanc with support of WADO and DICOMweb
orthanc-imagej (1.1+dfsg-1)
ImageJ plugin to import images from Orthanc
orthanc-postgresql (2.0-3+b1)
Plugins to use PostgreSQL as a database back-end to Orthanc
orthanc-webviewer (2.2-1+b2)
Web viewer of medical images for Orthanc
ossim-core (
OSSIM core utilities
otb-bin (5.8.0+dfsg-3)
ORFEO Toolbox command line applications
otb-bin-qt (5.8.0+dfsg-3)
ORFEO Toolbox graphical user interface applications
otb-testdriver (5.8.0+dfsg-3)
ORFEO Toolbox library - OTBTestDriver
otf-trace (1.12.5+dfsg-2+b2)
podporná knižnica Open Trace Format - vývojové súbory
ovito (2.8.1+dfsg2-5)
visualization and analysis tool for atomistic simulation data
p4vasp (0.3.29+dfsg-3)
visualization suite for the Vienna Ab-initio Simulation Package (VASP) (1.98-1+b4)
generic visualization tool (Gantt chart and more)
paml (4.8+dfsg-1) [non-free]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraclu (9-1+b2)
Parametric clustering of genomic and transcriptomic features
parafly (0.0.2013.01.21-3+b1)
parallel command processing using OpenMP
paraview (5.1.2+dfsg1-2)
aplikácia na paralelnú vizualizáciu
parsinsert (1.04-2)
Parsimonious Insertion of unclassified sequences into phylogenetic trees
parsnp (1.2+dfsg-3)
rapid core genome multi-alignment
paw (1:2.14.04.dfsg.2-9.1+b3)
pracovná stanica na analýzu fyziky - grafický analytický program
paw++ (1:2.14.04.dfsg.2-9.1+b3)
Physics Analysis Workstation (verzia rozšírená o Lesstif)
paw-common (1:2.14.04.dfsg.2-9.1)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9.1)
Physics Analysis Workstation examples and tests
pbbamtools (0.7.4+ds-1)
processing Pacific Biosciences binary alignment/map files
pbbarcode (0.8.0-4)
annotate PacBio sequencing reads with barcode information
pbdagcon (0.3+20161121+ds-1)
sequence consensus using directed acyclic graphs
pbgenomicconsensus (2.1.0-1)
Pacific Biosciences variant and consensus caller
pbh5tools (0.8.0+dfsg-5)
tools for manipulating Pacific Biosciences HDF5 files
pbhoney (15.8.24+dfsg-2)
genomic structural variation discovery
pbjelly (15.8.24+dfsg-2)
genome assembly upgrading tool
pbsim (1.0.3-2)
simulator for PacBio sequencing reads
pdb2pqr (2.1.1+dfsg-2)
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.4.0+dfsg-6)
Scientific workflow management system for HTCondor
perlprimer (1.2.3-1)
grafický návrh primérov pre PCR
perm (0.4.0-2)
efficient mapping of short reads with periodic spaced seeds
phipack (0.0.20160614-2)
PHI test and other tests of recombination
phybin (0.3-1+b1)
binning/clustering newick trees by topology
phylip (1:3.696+dfsg-5)
package of programs for inferring phylogenies
phyml (3:3.2.0+dfsg-7+b1)
Phylogenetic estimation using Maximum Likelihood
physamp (0.2.0-1+b1)
sample sequence alignment according to its corresponding phylogenetic tree
phyutility (2.7.3-1)
simple analyses or modifications on both phylogenetic trees and data matrices
picard-tools (2.8.1+dfsg-1)
Command line tools to manipulate SAM and BAM files
picosat (960-1+b2)
SAT solver with proof and core support
piler (0~20140707-1+b1)
genomic repeat analysis
pirs (2.0.2+dfsg-5.1+b1)
Profile based Illumina pair-end Reads Simulator
pirs-examples (2.0.2+dfsg-5.1)
profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles (2.0.2+dfsg-5.1)
profile basd Illumina pair-end Reads Simulator (profile data)
pktools (2.6.7-3)
GDAL add-on tools to perform useful raster processing
placnet (1.03-2)
Plasmid Constellation Network project
planets (0.1.13-16)
Gravitation simulation of planetary bodies
plast (2.3.1+dfsg-4)
Parallel Local Sequence Alignment Search Tool
plast-example (2.3.1+dfsg-4)
Parallel Local Sequence Alignment Search Tool (example data)
plastimatch (1.6.5+dfsg.1-1)
medical image reconstruction and registration
plink (1.07-7)
whole-genome association analysis toolset
plink1.9 (1.90~b3.45-170113-1)
whole-genome association analysis toolset
pnetcdf-bin (1.7.0-1+b2)
Programs for reading and writing parallel NetCDF files
poa (2.0+20060928-4+b1)
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1+b1)
population genetic software
poretools (0.6.0+dfsg-2)
toolkit for nanopore nucleotide sequencing data
poretools-data (0.6.0+dfsg-2)
toolkit for nanopore nucleotide sequencing data -- sample datasets
pp-popularity-contest (1.0.6-2+b4 [amd64, armel, armhf, i386, mips, mipsel, s390x], 1.0.6-2+b3 [arm64, ppc64el], 1.0.6-2+b2 [mips64el])
PredictProtein popularity contest
pprepair (0.0~20160321-87ffae5-1+b3)
nástroj na opravu rovinných priečok
praat (6.0.23-1)
program for speech analysis and synthesis
prank (0.0.150803-2)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-3)
prediction and analysis of protein nuclear localization signals
predictprotein (1.1.07-2)
suite of protein sequence analysis tools
prepair (0.7-6+b4)
polygon repair tool
prepair-data (0.7-6)
polygon repair tool -- example data
prime-phylo (1.0.11-4+b3)
bayesian estimation of gene trees taking the species tree into account
primer3 (2.3.7-3)
tool to design flanking oligo nucleotides for DNA amplification
primer3-examples (2.3.7-3)
tool to design flanking oligo nucleotides for DNA amplification (examples)
proalign (0.603-2)
Probabilistic multiple alignment program
probabel (0.4.5-3+b1)
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.5-3)
Example files for ProbABEL
probalign (1.4-5)
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-11)
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-11)
Extra programs from the probcons package
proda (1.0-10)
viacnásobné zarovnanie proteínových sekvencií
prodigal (1:2.6.3-1+b1)
Microbial (bacterial and archaeal) gene finding program
profbval (1.0.22-4)
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-3)
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-4)
neural network architecture for profbval
profnet-chop (1.0.22-4)
neural network architecture for profchop
profnet-con (1.0.22-4)
neural network architecture for profcon
profnet-isis (1.0.22-4)
neural network architecture for profisis
profnet-md (1.0.22-4)
neural network architecture for metadisorder
profnet-norsnet (1.0.22-4)
neural network architecture for norsnet
profnet-prof (1.0.22-4)
neural network architecture for profacc
profnet-snapfun (1.0.22-4)
neural network architecture for snapfun
profphd (1.0.42-1)
predpovedanie sekundárnej štruktúry a prístupnosti rozpúšťadiel
profphd-net (1.0.22-4)
architektúra neurónových sietí pre profphd
profphd-utils (1.0.10-3+b1)
pomocné nástroje profphd convert_seq a filter_hssp
proftmb (1.1.12-6+b1)
per-residue prediction of bacterial transmembrane beta barrels
progressivemauve (1.2.0+4713-2+b2)
multiple genome alignment algorithms
proj-bin (4.9.3-1)
knižnica na kartografickú projekciu - nástroje
proj-rdnap (2008-6) [non-free]
RDNAP grid correction files for PROJ.4
prooftree (0.13-1)
proof-tree visualization for Proof General
proteinortho (5.15+dfsg-1)
Detection of (Co-)orthologs in large-scale protein analysis
prottest (3.4.2+dfsg-2)
selection of best-fit models of protein evolution
psfex (3.17.1+dfsg-3+b2)
Point Spread Function model extractor
psi3 (3.4.0-6+b2 [mips64el], 3.4.0-6+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
Quantum Chemical Program Suite
psi4 (1:1.0-1+b1)
Quantum Chemical Program Suite
psi4-data (1:1.0-1)
Quantum Chemical Program Suite (data files)
psychopy (1.83.04.dfsg-2)
environment for creating psychology stimuli in Python
psychtoolbox-3-common (
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (
sada nástrojov na výskum videnia - časti špecifické pre architektúru
purify (2.0.0-1+b1 [amd64], 2.0.0-1 [armel, armhf, i386])
Collection of routines for radio interferometric imaging
pyfai (0.13.0+dfsg-1)
Fast Azimuthal Integration scripts
pyfr (1.5.0-1)
flux reconstruction in Python
pymca (5.1.3+dfsg-1)
Applications and toolkit for X-ray fluorescence analysis -- scripts
pymca-data (5.1.3+dfsg-1)
Architecture independent data files for PyMca
pymoctool (0.4.2-1)
Python Multi-Order Coverage maps tool for Virtual Observatory
pymol (
systém na vykresľovanie molekúl
pymol-data (
data files for PyMOL
pysatellites (2.4-2)
simulates the launching of satellites
python-drizzle-testdata (1.3-2)
Dithered image combination for Python (Test data)
python-escript (5.0-3)
Escript/Finley finite elements Python2 system (with OpenMP)
python-escript-doc (5.0-3)
Documentation for Escript/Finley
python-escript-mpi (5.0-3)
Escript/Finley finite elements Python2 system (OpenMP + MPI)
python-expyriment (0.7.0+git34-g55a4e7e-3.2)
Python library for cognitive and neuroscientific experiments
python-pybigwig (0.3.2-1)
Python 2 module for quick access to bigBed and bigWig files
python-pynlpl (1.1.2-1)
PyNLPl is a library for Natural Language Processing (Python 2 version)
python3-escript (5.0-3)
Escript/Finley finite elements Python3 system (with OpenMP)
python3-escript-mpi (5.0-3)
Escript/Finley finite elements Python3 system (OpenMP + MPI)
python3-pybigwig (0.3.2-1)
Python 3 module for quick access to bigBed and bigWig files
python3-pynlpl (1.1.2-1)
PyNLPl is a library for Natural Language Processing (Python 3 version)
pyzo (4.3.1-1+deb9u1)
interactive editor for scientific Python
qfits-tools (6.2.0-8+b2)
FITS manipulation tools
qfitsview (3.3+p1+dfsg-2)
FITS file viewer based on DPUSER
qgis (2.14.11+dfsg-3+deb9u1)
Geografický Informačný Systém (GIS)
qgis-api-doc (2.14.11+dfsg-3+deb9u1)
QGIS API documentation
qgis-common (2.14.11+dfsg-3+deb9u1)
QGIS - architecture-independent data
qgis-plugin-grass (2.14.11+dfsg-3+deb9u1)
zásuvný modul GRASS pre QGIS
qgis-plugin-grass-common (2.14.11+dfsg-3+deb9u1)
zásuvný modul GRASS pre QGIS - súbory nezávislé od architektúry
qgis-provider-grass (2.14.11+dfsg-3+deb9u1)
poskytovateľ GRASS pre QGIS
qgis-providers (2.14.11+dfsg-3+deb9u1)
kolekcia poskytovateľov dát pre QGIS
qgis-providers-common (2.14.11+dfsg-3+deb9u1)
kolekcia poskytovateľov dát pre QGIS - súbory nezávislé od architektúry
qgis-server (2.14.11+dfsg-3+deb9u1)
QGIS server providing various OGC services
qmapshack (1.7.2-1)
GPS mapping (GeoTiff and vector) and GPSr management
qmc (0.94-3.1)
nástroj na zjednodušovanie Quine-McCluskyho algoritmom
qnifti2dicom (0.4.11-1+b3)
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.1.20150729-2)
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-3+b1)
kontrolér Funcube Dongle
qtltools (1.1+dfsg-1)
Tool set for molecular QTL discovery and analysis
quantum-espresso (6.0-3)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (6.0-3)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
qutemol (0.4.1~cvs20081111-6+b2)
interactive visualization of macromolecules
rambo-k (1.21+dfsg-1)
Read Assignment Method Based On K-mers
rapmap (0.4.0+dfsg-2)
rapid sensitive and accurate DNA read mapping via quasi-mapping
rasmol (
vizualizácia biologických makromolekúl
raster3d (3.0-3-2+b1)
tools for generating images of proteins or other molecules
rate4site (3.0.0-4+b1)
detector of conserved amino-acid sites
rawtran (0.3.8-2+b1)
RAW photo to FITS converter
raxml (8.2.9+dfsg-1+b1)
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.1-4+b1)
de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.1-4)
Scripts and XSL sheets for post-processing for ray
rdkit-data (201603.5-2)
Collection of cheminformatics and machine-learning software (data files)
rdp-classifier (2.10.2-1)
extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
readseq (1-11+b1)
Conversion between sequence formats
reapr (1.0.18+dfsg-3)
universal tool for genome assembly evaluation
relion-bin (1.4+dfsg-2+b2)
toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui (1.4+dfsg-2+b2)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi (1.4+dfsg-2+b2)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi+gui (1.4+dfsg-2+b2)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
repeatmasker-recon (1.08-3+b1)
finds repeat families from biological sequences
reprof (1.0.1-4)
protein secondary structure and accessibility predictor
rna-star (2.5.2b+dfsg-1)
ultrafast universal RNA-seq aligner
rnahybrid (2.1.2-1+b1)
Fast and effective prediction of microRNA/target duplexes
roary (3.8.0+dfsg-1)
high speed stand alone pan genome pipeline
rsem (1.2.31+dfsg-1)
RNA-Seq by Expectation-Maximization
rtax (0.984-5)
Classification of sequence reads of 16S ribosomal RNA gene
ruby-rgfa (1.3.1-1)
parse, edit and write GFA format graphs in Ruby
saga (2.3.1+dfsg-3)
System for Automated Geoscientific Analyses
saga-common (2.3.1+dfsg-3)
SAGA GIS architecture independent files
saint (2.5.0+dfsg-2+b1)
Significance Analysis of INTeractome
salmon (0.7.2+ds1-2+b1)
wicked-fast transcript quantification from RNA-seq data
samtools (1.3.1-3)
processing sequence alignments in SAM and BAM formats
samtools-test (1.3.1-3)
test files for the samtools package
saods9 (7.5+repack1-2)
Image display tool for astronomy
saods9-tclpackages (7.5+repack1-2)
Tcl/Tk packages provided with DS9
sat4j (2.3.5-0.2)
výkonná knižnica riešiteľov SAT v Jave
savi (1.5.0a-1)
satellite constellation visualisation
sbmltoolbox (4.1.0-3)
libsbml toolbox for octave and matlab
scamp (2.0.4-3+b1)
Compute astrometric and photometric solutions
science-astronomy (1.7)
Debian Science Astronomy transitional package
science-astronomy-dev (1.7)
Debian Science Astronomy-dev transitional package
science-biology (1.7)
Debian Science Biology packages
science-chemistry (1.7)
Debian Science Chemistry packages
science-config (1.7)
Debian Science Project config package
science-dataacquisition (1.7)
Debian Science data acquisition packages
science-dataacquisition-dev (1.7)
Debian Science data acquisition development packages
science-distributedcomputing (1.7)
Debian Science Distributed Computing packages
science-economics (1.7)
Debian Science Economics packages
science-electronics (1.7)
Debian Science Electronics packages
science-electrophysiology (1.7)
Debian Science packages for Electrophysiology
science-engineering (1.7)
Debian Science Engineering packages
science-engineering-dev (1.7)
Debian Science Engineering-dev packages
science-financial (1.7)
Debian Science financial engineering and computational finance
science-geography (1.7)
Debian Science Geography packages
science-geometry (1.7)
Debian Science geometry packages
science-highenergy-physics (1.7)
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.7)
Debian Science High Energy Physics development packages
science-imageanalysis (1.7)
Debian Science image analysis packages
science-linguistics (1.7)
Debian Science Linguistics packages
science-logic (1.7)
Debian Science Logic packages
science-machine-learning (1.7)
Debian Science Machine Learning packages
science-mathematics (1.7)
Debian Science Mathematics packages
science-mathematics-dev (1.7)
Debian Science Mathematics-dev packages
science-meteorology (1.7)
Debian Science Meteorology packages
science-meteorology-dev (1.7)
Debian Science Meteorology-dev packages
science-nanoscale-physics (1.7)
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.7)
Debian Science Nanoscale Physics development packages
science-neuroscience-cognitive (1.7)
Debian Science packages for Cognitive Neuroscience
science-neuroscience-modeling (1.7)
Debian Science packages for modeling of neural systems
science-numericalcomputation (1.7)
Debian Science Numerical Computation packages
science-physics (1.7)
Debian Science Physics packages
science-physics-dev (1.7)
Debian Science Physics-dev packages
science-presentation (1.7)
Debian Science generic tools for presentations
science-psychophysics (1.7)
Debian Science packages for Psychophysics
science-robotics (1.7)
Debian Robotics packages
science-robotics-dev (1.7)
Debian Robotics development packages
science-simulations (1.7)
Debian Science Simulation packages
science-social (1.7)
Debian Science social sciences packages
science-statistics (1.7)
Debian Science Statistics packages
science-tasks (1.7)
Debian Science tasks for tasksel
science-typesetting (1.7)
Debian Science typesetting packages
science-viewing (1.7)
Debian Science data visualisation packages
science-viewing-dev (1.7)
Debian Science development of visualisation applications
scram (0.11.5-1)
Probabilistic Risk Analysis Tool
scrm (1.7.2-1+b1)
simulator of evolution of genetic sequences
sctk (2.4.10-20151007-1312Z+dfsg2-3)
speech recognition scoring toolkit
scythe (0.994-4)
Bayesian adaptor trimmer for sequencing reads
sdrangelove (
Osmocom Software Defined Radio
seaview (1:
multiplatformné rozhranie na zarovnanie sekvencií a fylogenetiku
seer (1.1.2-3)
genomic sequence element (kmer) enrichment analysis
seq-gen (1.3.3-1+b1 [armhf], 1.3.3-1 [amd64, armel, i386, mips, mipsel, s390x]) [non-free]
simulate the evolution of nucleotide or amino acid sequences
seqan-apps (2.3.1+dfsg-4)
C++ library for the analysis of biological sequences
seqprep (1.3.2-1)
stripping adaptors and/or merging paired reads of DNA sequences with overlap
seqprep-data (1.3.2-1)
example data set for seqprep - only used for testing
seqtk (1.2-1)
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.19.5+dfsg-4+b1)
extraktor zdrojov z astronomických obrázkov
sga (0.10.15-2)
de novo genome assembler that uses string graphs
shelxle (1.0.816-1)
graphical user interface for SHELXL
sibsim4 (0.20-2+b1)
align expressed RNA sequences on a DNA template
sickle (1.33-1+b1)
windowed adaptive trimming tool for FASTQ files using quality
sift (4.0.3b-4) [non-free]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-4+b1)
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-5)
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20121010-4)
tool for aligning cDNA and genomic DNA
sim4db (0~20150903+r2013-3)
batch spliced alignment of cDNA sequences to a target genome
simgrid-java (3.14.159-2)
Java bindings for the SimGrid Toolkit
siril (0.9.5-2)
astronomical image processing tool
skycat (3.1.2+starlink1~b+dfsg-2+b3)
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.35-2)
produce plots and drawings through Xfig's fig2dev in S-Lang
sleepyhead (1.0.0-beta-2+dfsg-2+b1)
Sleep tracking software with a focus on monitoring CPAP treatment
smalt (0.7.6-6)
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-6)
Sequence Mapping and Alignment Tool (examples)
smithwaterman (0.0+20160702-1+b1)
determine similar regions between two strings or genomic sequences
smrtanalysis (0~20161126)
software suite for single molecule, real-time sequencing
snakemake (3.10.0-1)
pythonic workflow management system
snap (2013-11-29-6)
location of genes from DNA sequence with hidden markov model
snap-aligner (1.0~beta.18+dfsg-1)
Scalable Nucleotide Alignment Program
snaphu (1.4.2-2) [non-free]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
sniffles (1.0.2+ds-1)
structural variation caller using third-generation sequencing
snp-sites (2.3.2-1)
Binary code for the package snp-sites
snpomatic (1.0-3+b1)
fast, stringent short-read mapping software
soapdenovo (1.05-3)
short-read assembly method to build de novo draft assembly
soapdenovo2 (240+dfsg1-2)
short-read assembly method to build de novo draft assembly
sortmerna (2.1-1+b1)
tool for filtering, mapping and OTU-picking NGS reads
spaced (1.0.2+dfsg-1+b1)
alignment-free sequence comparison using spaced words
spades (3.9.1+dfsg-1)
genome assembler for single-cell and isolates data sets
spass (3.7-4)
automated theorem prover for first-order logic with equality
spatialite-bin (4.3.0-2+b3)
Geospatial extension for SQLite - tools
spd (1.3.0-1+b2)
Synchrotron image corrections and azimuthal integration
splash (2.6.0-2+b1)
Visualisation tool for Smoothed Particle Hydrodynamics simulation
sprai (
single-pass sequencing read accuracy improver
spread-phy (1.0.7+dfsg-1)
analyze and visualize phylogeographic reconstructions
squizz (0.99c+dfsg-1)
Converter for genetic sequences and alignments
sra-toolkit (2.8.1-2+dfsg-2)
utilities for the NCBI Sequence Read Archive
srst2 (0.2.0-4)
Short Read Sequence Typing for Bacterial Pathogens
ssake (3.8.4-1)
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8.4-1)
example data for SSAKE, a genomic assembler of short reads
sspace (2.1.1+dfsg-2)
scaffolding pre-assembled contigs after extension
ssw-align (1.1-1+b1)
Smith-Waterman aligner based on libssw
stacks (1.44-2+b1)
pipeline for building loci from short-read DNA sequences
stacks-web (1.44-2)
web interface for displaying loci from short-read sequences
staden (2.0.0+b11-2+b1)
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b11-2)
Architecture independent files for Staden
staden-io-lib-examples (1.14.8-2)
programs for maniuplating DNA sequencing files (usage examples)
staden-io-lib-utils (1.14.8-2)
programs for maniuplating DNA sequencing files
stardata-common (0.8+b1)
Common framework to manage astronomy packages
starplot (0.95.5-8.2+deb9u1)
3-dimensional perspective star map viewer
starpu-contrib-examples (1.2.0+dfsg-4) [contrib]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.2.0+dfsg-4)
Task scheduler for heterogeneous multicore machines - exs
virtuálny balík poskytovaný balíkom starpu-contrib-examples
stellarium (0.15.0-1+b1)
fotorealistický generátor hviezdnej oblohy v reálnom čase
stellarium-data (0.15.0-1)
Stellarium - dátové súbory
step (4:16.08.0-1+b1)
interaktívny fyzikálny simulátor pre KDE
stiff (2.4.0-2+b1)
convert scientific FITS images to the TIFF format
subread (1.5.1+dfsg-4)
toolkit for processing next-gen sequencing data
subread-data (1.5.1+dfsg-4)
data files for subread package
suitename (0.3.070628-1+b1)
categorize each suite in an RNA backbone
sumaclust (1.0.20-1+b1)
fast and exact clustering of genomic sequences
sumatra (1.0.20-1+b1)
fast and exact comparison and clustering of sequences
sumo (0.28.0+dfsg1-1)
Simulation of Urban MObility (SUMO)
surankco (0.0.r5+dfsg-1)
Supervised Ranking of Contigs in de novo Assemblies
survex (1.2.30-1)
cave surveying and mapping software
survex-aven (1.2.30-1)
sophisticated cave survey viewer for Survex
swarm (2.1.12+dfsg-1)
robust and fast clustering method for amplicon-based studies
swarp (2.38.0+dfsg-3+b1)
Resample and co-add together FITS images
virtuálny balík poskytovaný balíkom suckless-tools
swe-basic-data (
basic data files for the libswe package
swe-standard-data (00004-1)
standard data for the Swiss Ephemeris
synphot-data ( [contrib]
Optional data files for pysynphot
syrthes (4.3.0-dfsg1-2)
Transient thermal simulations in complex solid geometries
syrthes-gui (4.3.0-dfsg1-2)
Transient thermal simulations in complex solid geometries - GUI
syrthes-tests (4.3.0-dfsg1-2)
Test cases for SYRTHES
syrthes-tools (4.3.0-dfsg1-2)
Transient thermal simulations in complex solid geometries - tools
t-coffee (11.00.8cbe486-5)
Multiple Sequence Alignment
t-coffee-examples (11.00.8cbe486-5)
annotated examples for the use of T-Coffee
tabix (1.3.2-2)
generic indexer for TAB-delimited genome position files
tandem-mass (1:20151215-4+b1)
mass spectrometry software for protein identification
tantan (13-4)
low complexity and tandem repeat masker for biosequences
tcd-utils (20061127-2+b2)
convert Tide Constituent Database (TCD) files
terraintool (1.12a-1)
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6.2)
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6.2)
simulation of 3D optical systems using FDTD on MPI clusters
therion (5.3.16-10+b4)
Cave surveying - 2D and 3D drawing software
therion-viewer (5.3.16-10+b4)
Cave surveying - 3D viewer for therion models
theseus (3.3.0-5+b1)
superimpose macromolecules using maximum likelihood
theseus-examples (3.3.0-5)
superimpose macromolecules using maximum likelihood (examples)
tigr-glimmer (3.02b-1)
Gene detection in archea and bacteria
timbl (6.4.8-1+b1)
Tilburg Memory Based Learner
timblserver (1.11-1+b1)
Server extensions for Timbl
tksao (7.5+repack1-2)
Tk widgets for astronomical imaging and data visualization
tm-align (20160521+dfsg-2)
structural alignment of proteins
tophat (2.1.1+dfsg-2+b2)
fast splice junction mapper for RNA-Seq reads
toppred (1.10-4)
transmembrane topology prediction
transcalc (0.14-6)
microwave and RF transmission line calculator
transdecoder (3.0.1+dfsg-1)
find coding regions within RNA transcript sequences
transrate-tools (1.0.0-1+b1)
helper for transrate
transtermhp (2.09-3+b1)
find rho-independent transcription terminators in bacterial genomes
travis (161013-1)
trajectory analyzer and visualizer
tree-ppuzzle (5.2-8+b3)
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-8+b3)
Reconstruction of phylogenetic trees by maximum likelihood
treeview (
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-4)
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [non-free]
High-quality 2-D mesh generator binary programs
trimmomatic (0.36+dfsg-1)
flexible read trimming tool for Illumina NGS data
trinityrnaseq (2.2.0+dfsg-2+b1)
RNA-Seq De novo Assembly
trinityrnaseq-examples (2.2.0+dfsg-2)
RNA-Seq De novo Assembly common example and testing files
tunnelx (20160713-3)
Cave Survey drawing software
twms (0.05t-4)
tiny web map service
ubertooth (2015.09.R2-4)
2.4 GHz wireless development platform for Bluetooth experimentation
ubertooth-firmware (2015.09.R2-4)
Firmware for Ubertooth
ubertooth-firmware-source (2015.09.R2-4)
Source code for the Ubertooth firmware
uc-echo (1.12-9+b1)
error correction algorithm designed for short-reads from NGS
ucto (0.9.6-1)
Unicode Tokenizer
uctodata (0.4-1)
Data files for Ucto
ugene (1.25.0+dfsg-1) [non-free]
integrated bioinformatics toolkit
ugene-data (1.25.0+dfsg-1) [non-free]
required data for UGENE - integrated bioinformatics toolkit
uhd-host (3.9.5-2+b3)
univerzálny hardvérový ovládač pre produkty Ettus Research - hosťovské aplikácie
units-filter (3.7-3)
Parser for expressions concerning physical values
v-sim (3.7.2-2)
Visualize atomic structures
v-sim-common (3.7.2-2)
Visualize atomic structures (support files)
v-sim-plugins (3.7.2-2)
Plugins for V_Sim (a 3D visualization package)
varna (3-93+ds-1)
Visualization Applet for RNA
varscan (2.4.3+dfsg-1) [non-free]
variant detection in next-generation sequencing data
vcftools (0.1.14+dfsg-4+deb9u1)
Collection of tools to work with VCF files
velvet (1.2.10+dfsg1-3+b1)
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-3)
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-3+b1)
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-3)
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.5-5)
automatically optimise Velvet do novo assembly parameters
veusz (1.21.1-1.1)
2D scientific plotting application with graphical interface
veusz-helpers (1.21.1-1.1)
Architecture-specific helper module for Veusz
viewmol (2.4.1-24+b1)
graphical front end for computational chemistry programs
visp-images-data (3.0.0-2)
visual servoing library - dataset reference files
vistrails (2.2.4-1)
Science visualisation workflow toolkit
vmtk (1.3+dfsg-2.1+deb9u1) [non-free]
the Vascular Modeling Toolkit
votca-csg (1.3.0-3+b1)
VOTCA's coarse-graining engine
votca-csg-scripts (1.3.0-3)
VOTCA's coarse-graining scripts
votca-csg-tutorials (1.3.0-3)
VOTCA's coarse-graining tutorials
voxbo (1.8.5~svn1246-2+b3)
processing, statistical analysis, and display of brain imaging data
vsearch (2.3.4-1)
tool for processing metagenomic sequences
wcslib-tools (5.16-1)
Command line tools utilizing wcslib
wcstools (3.9.4-2+b1)
Handle the WCS of a FITS image
weightwatcher (1.12-1+b1)
Combine maps and polygon data for astronomical image processing
weka (3.6.14-1)
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn973-1)
Web-based customizable weather station software
wigeon (20101212+dfsg1-1)
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-19)
comparison of biopolymers, like DNA and protein sequences
wsclean (2.2.1-1)
Fast generic widefield interferometric imager
wxastrocapture (1.8.1+git20140821+dfsg-1+b2)
Windows linuX Astronomy Capture
xbs (0-10+b1)
3D modely a filmy molekúl
xcrysden (1.5.60-1+b2)
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.60-1)
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-6)
Chemical structures and reactions editor
xflr5 (6.09.06-2+b3)
analysis tool for airfoils
xfoil (6.99.dfsg-2+b1)
program for the design and analysis of subsonic airfoils
xmakemol (5.16-9+b1)
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-9+b1)
program for visualizing atomic and molecular systems (OpenGL)
xmds2 (2.2.2+dfsg-3)
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.18-1+b1)
Tools for seamless communication between Unix programs
xplot (1.19-9+b2)
jednoduché vykresľovanie stĺpcových dát x-y na obrazovku (
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1+b2)
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13.2-1+b3)
provides tide and current predictions
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20100529-1)
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [non-free]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.33-1+b1)
data thief for scientists
yade (2017.01a-8)
Platform for discrete element modeling
yagv (0.4~20130422.r5bd15ed+dfsg-1)
yet another G-code viewer
yale (5.0.95-2) [non-free]
stellar data set from the Yale Bright Star Catalog
yorick (2.2.04+dfsg1-6+b1)
interpreted language and scientific graphics
yorick-av (0.0.4-2~deb9u1)
write movies from Yorick in various formats
yorick-cubeview (2.2-2)
3D FITS data viewer specialized in spectro-imaging
yorick-curses (0.1-6+b1)
interface to the (n)curses library for the Yorick language
yorick-data (2.2.04+dfsg1-6)
interpreted library for the Yorick language
yorick-dev (2.2.04+dfsg1-6+b1)
development files for the Yorick interpreted language
yorick-full (2.2.04+dfsg1-6+b1)
full installation of the Yorick interpreter and add-ons
yorick-gl (1.1+cvs20070922+dfsg-6.1)
OpenGL 3D graphics support for the Yorick language
yorick-gy (0.0.5-1)
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (1.2.0-2)
General relativistic geodesic integration for the Yorick language
yorick-hdf5 (0.8.0-8)
Hierarchical Data Format 5 interface for the Yorick language
yorick-imutil (0.5.7-3)
fast image manipulation routines for the Yorick language
yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-2)
optical interferometry image reconstruction within Yorick
yorick-ml4 (0.6.0-3)
Matlab file format support for the Yorick language
yorick-mpeg (0.1-3)
MPEG output support for the Yorick language
yorick-mpy-common (2.2.04+dfsg1-6)
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.04+dfsg1-6+b1)
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.04+dfsg1-6+b1)
Message Passing Yorick (OpenMPI build)
yorick-optimpack (1.3.2+dfsg+1.4.0-1)
optimization of large scale problems for the Yorick language
yorick-soy (1.4.0-3)
sparse matrix operations for the Yorick language
yorick-spydr (0.8.2-3)
FITS image display and simple analysis
yorick-svipc (0.16-2+b2)
interprocess communication (shared memory...) for Yorick
yorick-yao (5.4.0-1)
Yorick-based adaptive optics system simulator
yorick-yeti (6.4.0-1)
utility plugin for the Yorick language
yorick-yeti-fftw (6.4.0-1)
FFT plugin for the Yorick language
yorick-yeti-regex (6.4.0-1)
POSIX regular expressions for the Yorick language
yorick-yeti-tiff (6.4.0-1)
TIFF image format input for the Yorick language
yorick-ygsl (1.2.1-1)
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.3-1)
nonequispaced fast Fourier transform for Yorick
yorick-yutils (1.5.2-1)
various utilities for the Yorick language
yorick-z (1.2.0+cvs20080115-5+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x], 1.2.0+cvs20080115-5+b1 [mips64el])
zlib, jpeg and png support for the Yorick language
z3 (4.4.1-0.4~deb9u1)
theorem prover from Microsoft Research
z88 (13.0.0+dfsg2-4+b1)
Finite Element Analysis Program - runtime
z88-data (13.0.0+dfsg2-4)
Finite Element Analysis Program - data
zalign (0.9.1-2+b3)
parallel local alignment of biological sequences
zegrapher (3.0-2)
plotting mathematical functions and sequences on the plane
zimpl (3.3.2-1+b1)
mathematical modeling language for optimization problems
ztex-bmp (20120314-2)
universal macro processor