Balík: bandage (0.9.0-2 a iné) [debports]

[ Zdroj:  ]

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.

De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

More information and download links are on the Bandage website: rrwick.github.io/Bandage

The package is relevant to the field of genome assembly.

Ostatné balíky súvisiace s balíkom bandage

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 4.0)

  podporná knižnica GCC

• dep: libqt5core5t64 (>= 5.15.1)

  základný modul Qt 5

• dep: libqt5gui5t64 (>= 5.8.0)

  modul grafického používateľského rozhrania Qt 5

  alebo libqt5gui5-gles (>= 5.8.0)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 - modul SVG

• dep: libqt5widgets5t64 (>= 5.15.1)

  modul ovládacích prvkov Qt 5

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

Stiahnuť bandage

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
ppc64 (neoficiálny port)	0.9.0-2+b1	944.9 kB	2,923.0 kB	[zoznam súborov]