Balík: snpsift (5.1+dfsg2-2)

[ Zdroj: snpsift  ]

tool to annotate and manipulate genome variants - tool

SnpSift is a toolbox that allows one to filter and manipulate annotated files. Once the genomic variants have been annotated, one needs to filter them out in order to find the "interesting / relevant variants". Given the large data files, this is not a trivial task (e.g. one cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and filtering required at this stage in data processing pipelines.

This package contains the command line tool.

Ostatné balíky súvisiace s balíkom snpsift

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libsnpsift-java (= 5.1+dfsg2-2)

  tool to annotate and manipulate genome variants - lib

• sug: snpeff

  genetic variant annotation and effect prediction toolbox - tool

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