Balík: stacks (2.66+dfsg-1 a iné)

[ Zdroj: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Ostatné balíky súvisiace s balíkom stacks

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libdbi-perl

  rozhranie k databáze Perl (DBI)

• dep: libgcc-s1 (>= 3.5)

  podporná knižnica GCC

• dep: libgomp1 (>= 6)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  komprimačná knižnica - dynamická verzia

• rec: libspreadsheet-writeexcel-perl

  modul na tvorbu zošitov Excel

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  tiež virtuálny balík poskytovaný balíkom r-cran-littler

• sug: gdb

  GNU Debugger
  tiež virtuálny balík poskytovaný balíkom gdb-minimal

Stiahnuť stacks

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
armel	2.66+dfsg-1+b1	979.6 kB	5,148.0 kB	[zoznam súborov]