Balík: python3-pyfaidx (0.8.1.1-1)

[ Zdroj: python-pyfaidx  ]

efficient random access to fasta subsequences for Python 3

Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.

This package provides the Python 3 modules to access fasta files.

Ostatné balíky súvisiace s balíkom python3-pyfaidx

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-importlib-metadata

  library to access the metadata for a Python package - Python 3.x

• dep: python3-pkg-resources

  objavovanie balíkov a prístup k zdrojom prostredníctvom pkg_resources

• rec: python3-biopython

  Python3 library for bioinformatics

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