Balík: ncbi-entrez-direct (19.2.20230331+dfsg-3)

[ Zdroj: ncbi-entrez-direct  ]

NCBI Entrez utilities on the command line

Entrez Direct (EDirect) is an advanced method for accessing NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a terminal window or script. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.

EDirect also provides an argument-driven function that simplifies the extraction of data from document summaries or other results that are returned in structured XML format. This can eliminate the need for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomplished entirely within Entrez.

Ostatné balíky súvisiace s balíkom ncbi-entrez-direct

• dep: curl

  nástroj príkazového riadka na prenos údajov so syntaxou URL

  alebo wget

  sťahovanie súborov z webu

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• rec: python3

  interactive high-level object-oriented language (default python3 version)

• sug: curl

  nástroj príkazového riadka na prenos údajov so syntaxou URL

• sug: libxml-simple-perl

  modul jazyka Perl na čítanie a zápis XML

• sug: libxml2-utils

  GNOME XML library - utilities

• sug: perl

  Practical Extraction and Report Language od Larryho Walla

• sug: unzip

  rozbaľovač súborov .zip

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