Balík: libjellyfish-perl (2.2.10-2)

[ Zdroj: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Značky: Software Development: Perl Development, Knižnice, Implementované v: implemented-in::c, implemented-in::perl, Role: Vývojová knižnica

Ostatné balíky súvisiace s balíkom libjellyfish-perl

• dep: libc6 (>= 2.14) [amd64]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0)

  podporná knižnica GCC

• dep: libjellyfish-2.0-2

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: perl (>= 5.28.1-3)

  Practical Extraction and Report Language od Larryho Walla

• dep: perlapi-5.28.1

  virtuálny balík poskytovaný balíkom perl-base

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Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	55.3 kB	176.0 kB	[zoznam súborov]
arm64	51.6 kB	168.0 kB	[zoznam súborov]