Balík: boxshade (3.3.1-12)

[ Zdroj: boxshade  ]

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Značky: Biológia: Clustal/ALN, Proteins, Pole: field::biology, field::biology:bioinformatics, Implementované v: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Need an extra tag, Text

Ostatné balíky súvisiace s balíkom boxshade

• dep: libc6 (>= 2.14)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• sug: kalign

  Global and progressive multiple sequence alignment

  alebo clustalw

  globálne viacnásobné zarovnávanie sekvencií nukleotidov alebo peptidov

  alebo mafft

  Multiple alignment program for amino acid or nucleotide sequences

  alebo hmmer

  profile hidden Markov models for protein sequence analysis

• sug: seaview

  multiplatformné rozhranie na zarovnanie sekvencií a fylogenetiku

• sug: texlive-latex-extra

  TeX Live: LaTeX additional packages

• sug: xfig

  nástroj na interaktívnu tvorbu obrázkov pod X11

Stiahnuť boxshade

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	54.0 kB	161.0 kB	[zoznam súborov]