Balík: lumpy-sv (0.3.1+dfsg-5)

[ Zdroj: lumpy-sv  ]

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

Ostatné balíky súvisiace s balíkom lumpy-sv

• dep: bamkit

  tools for common BAM file manipulations

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.29)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  podporná knižnica GCC

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  štandardná knižnica C++ GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  schopnosti rýchlych polí do jazyka Python 3

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samblaster

  marks duplicates, extracts discordant/split reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: sambamba

  tools for working with SAM/BAM data

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
mipsel	175.8 kB	708.0 kB	[zoznam súborov]