Balík: libjellyfish-2.0-2 (2.3.0-10)

[ Zdroj: jellyfish  ]

count k-mers in DNA sequences (dynamic library of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the dynamic library the main executable of jellyfish is linked to.

Značky: Role: Shared Library

Ostatné balíky súvisiace s balíkom libjellyfish-2.0-2

• dep: libc6 (>= 2.14) [amd64]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [nie amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  štandardná knižnica C++ GNU v3

  dep: libstdc++6 (>= 9) [nie armel, armhf]

Stiahnuť libjellyfish-2.0-2

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	63.6 kB	198.0 kB	[zoznam súborov]
arm64	59.5 kB	189.0 kB	[zoznam súborov]
armel	55.5 kB	165.0 kB	[zoznam súborov]
armhf	55.9 kB	137.0 kB	[zoznam súborov]
i386	70.1 kB	197.0 kB	[zoznam súborov]
mips64el	60.6 kB	226.0 kB	[zoznam súborov]
ppc64el	69.0 kB	286.0 kB	[zoznam súborov]