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[ Source: tree-puzzle  ]

Package: tree-puzzle (5.2-10 and others)

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 5.2-10+b1 136.9 kB362.0 kB [list of files]
amd64 5.2-10+b1 134.2 kB309.0 kB [list of files]
arm64 5.2-10+b1 120.2 kB297.0 kB [list of files]
armel 5.2-10+b1 128.7 kB325.0 kB [list of files]
armhf 5.2-10+b1 121.1 kB241.0 kB [list of files]
hppa (unofficial port) 5.2-10+b1 126.5 kB310.0 kB [list of files]
hurd-i386 5.2-10+b1 134.7 kB333.0 kB [list of files]
i386 5.2-10+b1 134.5 kB329.0 kB [list of files]
kfreebsd-amd64 5.2-10+b1 134.6 kB313.0 kB [list of files]
kfreebsd-i386 5.2-10+b1 134.6 kB329.0 kB [list of files]
m68k (unofficial port) 5.2-10 120.4 kB320.0 kB [list of files]
mips 5.2-10+b1 132.0 kB353.0 kB [list of files]
mips64el 5.2-10+b1 133.7 kB368.0 kB [list of files]
mipsel 5.2-10+b1 133.5 kB353.0 kB [list of files]
powerpcspe (unofficial port) 5.2-10+b1 131.3 kB361.0 kB [list of files]
ppc64 (unofficial port) 5.2-10+b1 131.0 kB362.0 kB [list of files]
ppc64el 5.2-10+b1 129.6 kB362.0 kB [list of files]
s390x 5.2-10+b1 126.1 kB337.0 kB [list of files]
sh4 (unofficial port) 5.2-10 146.3 kB301.0 kB [list of files]
sparc64 (unofficial port) 5.2-10+b1 122.3 kB339.0 kB [list of files]
x32 (unofficial port) 5.2-10+b1 131.4 kB301.0 kB [list of files]