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[ Source: tree-puzzle  ]

Package: tree-ppuzzle (5.2-11)

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Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 151.9 kB402.0 kB [list of files]
amd64 148.4 kB345.0 kB [list of files]
arm64 142.4 kB353.0 kB [list of files]
armel 143.1 kB361.0 kB [list of files]
armhf 135.8 kB269.0 kB [list of files]
hppa (unofficial port) 140.6 kB350.0 kB [list of files]
hurd-i386 150.4 kB373.0 kB [list of files]
i386 150.4 kB381.0 kB [list of files]
kfreebsd-amd64 149.2 kB349.0 kB [list of files]
kfreebsd-i386 150.3 kB373.0 kB [list of files]
m68k (unofficial port) 135.3 kB361.0 kB [list of files]
mips 147.1 kB395.0 kB [list of files]
mips64el 148.7 kB415.0 kB [list of files]
mipsel 148.8 kB395.0 kB [list of files]
powerpcspe (unofficial port) 144.4 kB425.0 kB [list of files]
ppc64 (unofficial port) 157.7 kB490.0 kB [list of files]
ppc64el 155.8 kB426.0 kB [list of files]
riscv64 (unofficial port) 144.2 kB297.0 kB [list of files]
s390x 140.7 kB377.0 kB [list of files]
sh4 (unofficial port) 164.7 kB334.0 kB [list of files]
sparc64 (unofficial port) 135.2 kB380.0 kB [list of files]
x32 (unofficial port) 145.2 kB337.0 kB [list of files]