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[ Source: tophat  ]

Package: tophat (2.1.1+dfsg1-2)

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fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

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Download tophat

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 684.6 kB4,611.0 kB [list of files]
amd64 653.4 kB3,823.0 kB [list of files]
arm64 589.4 kB3,554.0 kB [list of files]
hppa (unofficial port) 633.1 kB3,935.0 kB [list of files]
kfreebsd-amd64 650.8 kB3,763.0 kB [list of files]
mips64el 654.2 kB4,661.0 kB [list of files]
ppc64 (unofficial port) 656.8 kB5,171.0 kB [list of files]
ppc64el 667.3 kB5,101.0 kB [list of files]
s390x 585.8 kB3,986.0 kB [list of files]
sh4 (unofficial port) 704.3 kB3,439.0 kB [list of files]
sparc64 (unofficial port) 538.2 kB3,740.0 kB [list of files]
x32 (unofficial port) 650.6 kB3,615.0 kB [list of files]