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[ Source: tophat  ]

Package: tophat (2.1.1+dfsg1-2 and others)

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fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

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Download tophat

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 2.1.1+dfsg1-2+b1 686.8 kB4,628.0 kB [list of files]
amd64 2.1.1+dfsg1-2+b1 654.2 kB3,832.0 kB [list of files]
arm64 2.1.1+dfsg1-2+b1 591.7 kB3,567.0 kB [list of files]
hppa (unofficial port) 2.1.1+dfsg1-2+b1 639.9 kB3,953.0 kB [list of files]
kfreebsd-amd64 2.1.1+dfsg1-2+b1 653.7 kB3,776.0 kB [list of files]
mips64el 2.1.1+dfsg1-2+b1 655.5 kB4,679.0 kB [list of files]
ppc64 (unofficial port) 2.1.1+dfsg1-2+b1 659.4 kB5,172.0 kB [list of files]
ppc64el 2.1.1+dfsg1-2+b1 668.5 kB5,166.0 kB [list of files]
s390x 2.1.1+dfsg1-2+b1 587.5 kB3,999.0 kB [list of files]
sh4 (unofficial port) 2.1.1+dfsg1-2+b1 704.4 kB3,452.0 kB [list of files]
sparc64 (unofficial port) 2.1.1+dfsg1-2+b1 540.1 kB3,757.0 kB [list of files]
x32 (unofficial port) 2.1.1+dfsg1-2 650.6 kB3,615.0 kB [list of files]