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[ Source: htslib  ]

Package: tabix (1.11-4)

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generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

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Download tabix

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 362.3 kB1,358.0 kB [list of files]
amd64 330.7 kB1,087.0 kB [list of files]
arm64 308.5 kB1,011.0 kB [list of files]
armel 293.1 kB1,004.0 kB [list of files]
armhf 298.7 kB728.0 kB [list of files]
hppa (unofficial port) 339.5 kB1,111.0 kB [list of files]
i386 360.7 kB1,200.0 kB [list of files]
m68k (unofficial port) 306.6 kB1,040.0 kB [list of files]
mips64el 312.8 kB1,240.0 kB [list of files]
mipsel 327.7 kB1,215.0 kB [list of files]
ppc64 (unofficial port) 351.9 kB1,467.0 kB [list of files]
ppc64el 358.6 kB1,467.0 kB [list of files]
riscv64 (unofficial port) 311.4 kB802.0 kB [list of files]
s390x 301.7 kB1,151.0 kB [list of files]
sh4 (unofficial port) 373.9 kB947.0 kB [list of files]
sparc64 (unofficial port) 296.3 kB1,094.0 kB [list of files]
x32 (unofficial port) 332.1 kB1,048.0 kB [list of files]