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[ Source: htslib  ]

Package: tabix (1.16+ds-3)

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generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

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Download tabix

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 486.2 kB2,758.0 kB [list of files]
amd64 446.3 kB2,185.0 kB [list of files]
arm64 417.1 kB2,177.0 kB [list of files]
armel 378.0 kB2,046.0 kB [list of files]
armhf 378.6 kB1,534.0 kB [list of files]
hppa (unofficial port) 439.0 kB2,210.0 kB [list of files]
i386 489.4 kB2,478.0 kB [list of files]
ia64 (unofficial port) 539.9 kB4,529.0 kB [list of files]
m68k (unofficial port) 408.1 kB2,030.0 kB [list of files]
mips64el 411.8 kB2,541.0 kB [list of files]
mipsel 425.5 kB2,532.0 kB [list of files]
ppc64 (unofficial port) 466.4 kB3,073.0 kB [list of files]
ppc64el 481.2 kB2,945.0 kB [list of files]
riscv64 (unofficial port) 407.1 kB1,544.0 kB [list of files]
s390x 404.3 kB2,293.0 kB [list of files]
sh4 (unofficial port) 466.8 kB1,921.0 kB [list of files]
sparc64 (unofficial port) 382.9 kB3,152.0 kB [list of files]
x32 (unofficial port) 444.2 kB2,114.0 kB [list of files]