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[ Source: t-coffee  ]

Package: t-coffee (12.00.7fb08c2-1)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Architecture Package Size Installed Size Files
alpha (unofficial port) 1,957.3 kB4,519.0 kB [list of files]
amd64 1,931.5 kB3,841.0 kB [list of files]
arm64 1,823.6 kB3,741.0 kB [list of files]
armel 1,772.5 kB3,632.0 kB [list of files]
armhf 1,791.7 kB3,036.0 kB [list of files]
hppa (unofficial port) 1,854.2 kB3,864.0 kB [list of files]
hurd-i386 1,953.0 kB4,192.0 kB [list of files]
i386 1,952.4 kB4,193.0 kB [list of files]
kfreebsd-amd64 1,931.4 kB3,841.0 kB [list of files]
kfreebsd-i386 1,952.4 kB4,193.0 kB [list of files]
m68k (unofficial port) 1,833.7 kB3,980.0 kB [list of files]
mips 1,862.6 kB4,386.0 kB [list of files]
mips64el 1,890.9 kB4,499.0 kB [list of files]
mipsel 1,875.2 kB4,386.0 kB [list of files]
powerpcspe (unofficial port) 1,836.2 kB4,148.0 kB [list of files]
ppc64 (unofficial port) 1,943.0 kB4,597.0 kB [list of files]
ppc64el 1,987.4 kB4,533.0 kB [list of files]
riscv64 (unofficial port) 1,887.4 kB3,378.0 kB [list of files]
s390x 1,849.8 kB4,145.0 kB [list of files]
sh4 (unofficial port) 2,024.1 kB3,705.0 kB [list of files]
sparc64 (unofficial port) 1,777.3 kB3,809.0 kB [list of files]
x32 (unofficial port) 1,927.4 kB3,829.0 kB [list of files]