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[ Source: t-coffee  ]

Package: t-coffee (11.00.8cbe486-8)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 1,867.5 kB4,196.0 kB [list of files]
amd64 1,839.0 kB3,587.0 kB [list of files]
arm64 1,742.2 kB3,491.0 kB [list of files]
armel 1,690.3 kB3,390.0 kB [list of files]
armhf 1,709.8 kB2,850.0 kB [list of files]
hppa (unofficial port) 1,770.0 kB3,601.0 kB [list of files]
hurd-i386 1,858.5 kB3,898.0 kB [list of files]
i386 1,857.7 kB3,902.0 kB [list of files]
kfreebsd-amd64 1,838.8 kB3,587.0 kB [list of files]
kfreebsd-i386 1,857.9 kB3,898.0 kB [list of files]
m68k (unofficial port) 1,750.2 kB3,698.0 kB [list of files]
mips 1,780.0 kB4,071.0 kB [list of files]
mips64el 1,807.8 kB4,179.0 kB [list of files]
mipsel 1,792.2 kB4,075.0 kB [list of files]
powerpcspe (unofficial port) 1,755.4 kB3,882.0 kB [list of files]
ppc64 (unofficial port) 1,850.3 kB4,267.0 kB [list of files]
ppc64el 1,897.3 kB4,203.0 kB [list of files]
s390x 1,769.2 kB3,875.0 kB [list of files]
sh4 (unofficial port) 1,921.3 kB3,455.0 kB [list of files]
sparc64 (unofficial port) 1,700.2 kB3,559.0 kB [list of files]
x32 (unofficial port) 1,833.7 kB3,570.0 kB [list of files]