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[ Source: t-coffee  ]

Package: t-coffee (11.00.8cbe486-6 and others)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download t-coffee

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 11.00.8cbe486-6 1,892.2 kB4,300.0 kB [list of files]
amd64 11.00.8cbe486-6 1,880.8 kB3,683.0 kB [list of files]
arm64 11.00.8cbe486-6 1,801.1 kB3,623.0 kB [list of files]
armel 11.00.8cbe486-6 1,708.1 kB3,490.0 kB [list of files]
armhf 11.00.8cbe486-6 1,703.8 kB3,394.0 kB [list of files]
hppa (unofficial port) 11.00.8cbe486-6 1,794.4 kB3,669.0 kB [list of files]
hurd-i386 11.00.8cbe486-6 1,883.7 kB3,990.0 kB [list of files]
i386 11.00.8cbe486-6 1,880.4 kB3,978.0 kB [list of files]
kfreebsd-amd64 11.00.8cbe486-6 1,880.9 kB3,687.0 kB [list of files]
kfreebsd-i386 11.00.8cbe486-6 1,880.3 kB3,978.0 kB [list of files]
m68k (unofficial port) 11.00.8cbe486-6 1,713.8 kB3,562.0 kB [list of files]
mips 11.00.8cbe486-6 1,803.7 kB4,151.0 kB [list of files]
mips64el 11.00.8cbe486-6+b1 1,825.7 kB4,256.0 kB [list of files]
mipsel 11.00.8cbe486-6 1,815.4 kB4,155.0 kB [list of files]
powerpcspe (unofficial port) 11.00.8cbe486-6 1,783.9 kB3,946.0 kB [list of files]
ppc64 (unofficial port) 11.00.8cbe486-6 1,878.1 kB4,395.0 kB [list of files]
ppc64el 11.00.8cbe486-6 1,930.0 kB4,331.0 kB [list of files]
s390x 11.00.8cbe486-6 1,770.7 kB3,867.0 kB [list of files]
sh4 (unofficial port) 11.00.8cbe486-6 1,949.6 kB3,514.0 kB [list of files]
sparc64 (unofficial port) 11.00.8cbe486-6 1,716.8 kB3,623.0 kB [list of files]
x32 (unofficial port) 11.00.8cbe486-6 1,880.3 kB3,706.0 kB [list of files]