all options
sid  ]
[ Source: simka  ]

Package: simkamin (1.5.1-4)

Links for simkamin

Screenshot

Debian Resources:

Download Source Package simka:

Maintainers:

External Resources:

Similar packages:

approximate comparative metagenomics method dedicated to NGS datasets

Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them.

The difference with Simka stands in the fact that SimkaMin outputs approximate (but very similar) results by subsampling the kmer space. With this strategy, and with default parameters, SimkaMin is an order of magnitude faster, uses 10 times less memory and 70 times less disk than Simka.

Other Packages Related to simkamin

  • depends
  • recommends
  • suggests
  • enhances

Download simkamin

Download for all available architectures
Architecture Package Size Installed Size Files
all 58.6 kB413.0 kB [list of files]