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[ Source: sigma-align  ]

Package: sigma-align (1.1.3-5)

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Simple greedy multiple alignment of non-coding DNA sequences

Sigma (“Simple greedy multiple alignment”) is an alignment program. It's algorithm and scoring scheme are designed specifically for non-coding DNA sequence.

It uses a strategy of seeking the best possible gapless local alignments. This happens at each step making the best possible alignment consistent with existing alignments. It scores the significance of the alignment based on the lengths of the aligned fragments and a background model. These may be supplied or estimated from an auxiliary file of intergenic DNA.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Download sigma-align

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 24.6 kB66.0 kB [list of files]
amd64 23.7 kB62.0 kB [list of files]
arm64 21.6 kB58.0 kB [list of files]
armel 22.9 kB57.0 kB [list of files]
armhf 20.9 kB49.0 kB [list of files]
hppa (unofficial port) 23.4 kB58.0 kB [list of files]
hurd-i386 23.5 kB57.0 kB [list of files]
i386 24.3 kB61.0 kB [list of files]
kfreebsd-amd64 23.9 kB62.0 kB [list of files]
kfreebsd-i386 24.2 kB61.0 kB [list of files]
m68k (unofficial port) 19.6 kB49.0 kB [list of files]
mips 23.4 kB63.0 kB [list of files]
mips64el 24.1 kB68.0 kB [list of files]
mipsel 23.5 kB63.0 kB [list of files]
powerpc 22.8 kB89.0 kB [list of files]
powerpcspe (unofficial port) 22.2 kB89.0 kB [list of files]
ppc64 (unofficial port) 24.1 kB91.0 kB [list of files]
ppc64el 24.4 kB90.0 kB [list of files]
s390x 23.0 kB62.0 kB [list of files]
sh4 (unofficial port) 23.2 kB53.0 kB [list of files]
sparc64 (unofficial port) 21.5 kB59.0 kB [list of files]
x32 (unofficial port) 23.1 kB57.0 kB [list of files]