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[ Source: sigma-align  ]

Package: sigma-align (1.1.3-4 and others)

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Simple greedy multiple alignment of non-coding DNA sequences

Sigma (“Simple greedy multiple alignment”) is an alignment program. It's algorithm and scoring scheme are designed specifically for non-coding DNA sequence.

It uses a strategy of seeking the best possible gapless local alignments. This happens at each step making the best possible alignment consistent with existing alignments. It scores the significance of the alignment based on the lengths of the aligned fragments and a background model. These may be supplied or estimated from an auxiliary file of intergenic DNA.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Download sigma-align

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.1.3-4 24.3 kB66.0 kB [list of files]
amd64 1.1.3-4+b1 23.7 kB59.0 kB [list of files]
arm64 1.1.3-4+b1 21.5 kB59.0 kB [list of files]
armel 1.1.3-4+b1 23.2 kB58.0 kB [list of files]
armhf 1.1.3-4+b1 21.1 kB50.0 kB [list of files]
hppa (unofficial port) 1.1.3-4 23.1 kB58.0 kB [list of files]
hurd-i386 1.1.3-4 23.6 kB57.0 kB [list of files]
i386 1.1.3-4+b1 24.6 kB62.0 kB [list of files]
kfreebsd-amd64 1.1.3-4+b1 23.8 kB59.0 kB [list of files]
kfreebsd-i386 1.1.3-4+b1 24.6 kB62.0 kB [list of files]
m68k (unofficial port) 1.1.3-4 19.4 kB49.0 kB [list of files]
mips 1.1.3-4+b1 23.5 kB64.0 kB [list of files]
mips64el 1.1.3-4+b1 24.3 kB69.0 kB [list of files]
mipsel 1.1.3-4+b1 23.6 kB64.0 kB [list of files]
powerpc 1.1.3-4+b1 22.1 kB90.0 kB [list of files]
powerpcspe (unofficial port) 1.1.3-4 21.9 kB89.0 kB [list of files]
ppc64 (unofficial port) 1.1.3-4+b1 23.0 kB92.0 kB [list of files]
ppc64el 1.1.3-4+b1 23.2 kB91.0 kB [list of files]
s390x 1.1.3-4+b1 23.1 kB63.0 kB [list of files]
sh4 (unofficial port) 1.1.3-4 22.6 kB53.0 kB [list of files]
sparc64 (unofficial port) 1.1.3-4+b1 21.3 kB60.0 kB [list of files]
x32 (unofficial port) 1.1.3-4 23.0 kB58.0 kB [list of files]