Package: tvc (5.0.3+git20151221.80e144e+dfsg-5 and others)

[ Source: tvc  ]

genetic variant caller for Ion Torrent sequencing platforms

Torrent Variant Caller (TVC) is a genetic variant caller for Ion Torrent sequencing platforms, and is specially optimized to exploit the underlying flow signal information in the statistical model to evaluate variants. Torrent Variant Caller is designed to call single-nucleotide polymorphisms (SNPs), multi-nucleotide polymorphisms (MNPs), insertions, deletions, and block substitutions.

Other Packages Related to tvc

• dep: libarmadillo12 (>= 1:12.6.1+dfsg) [not riscv64]

  streamlined C++ linear algebra library

  dep: libarmadillo12 (>= 1:12.6.7+dfsg) [riscv64]

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libjsoncpp25 (>= 1.9.5)

  library for reading and writing JSON for C++

• dep: liblapack3 [sparc64]

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 13.1) [not alpha]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.2.0-2) [alpha]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download tvc

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	1,025.9 kB	3,734.0 kB	[list of files]
amd64	5.0.3+git20151221.80e144e+dfsg-5+b1	1,072.7 kB	3,449.0 kB	[list of files]
arm64	5.0.3+git20151221.80e144e+dfsg-5+b1	982.0 kB	3,349.0 kB	[list of files]
armel	5.0.3+git20151221.80e144e+dfsg-5+b1	955.0 kB	3,133.0 kB	[list of files]
armhf	5.0.3+git20151221.80e144e+dfsg-5+b1	968.4 kB	2,665.0 kB	[list of files]
hppa (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	1,014.0 kB	3,227.0 kB	[list of files]
i386	5.0.3+git20151221.80e144e+dfsg-5+b1	1,102.7 kB	3,496.0 kB	[list of files]
ia64 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	1,176.5 kB	5,139.0 kB	[list of files]
m68k (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	957.1 kB	3,232.0 kB	[list of files]
mips64el	5.0.3+git20151221.80e144e+dfsg-5+b1	991.3 kB	3,753.0 kB	[list of files]
ppc64 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	1,054.8 kB	3,935.0 kB	[list of files]
ppc64el	5.0.3+git20151221.80e144e+dfsg-5+b1	1,065.0 kB	3,733.0 kB	[list of files]
riscv64	5.0.3+git20151221.80e144e+dfsg-5+b1	1,040.2 kB	2,937.0 kB	[list of files]
s390x	5.0.3+git20151221.80e144e+dfsg-5+b1	1,049.4 kB	3,500.0 kB	[list of files]
sh4 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	1,045.5 kB	3,088.0 kB	[list of files]
sparc64 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	951.6 kB	5,541.0 kB	[list of files]
x32 (unofficial port)	5.0.3+git20151221.80e144e+dfsg-5+b1	1,058.6 kB	3,323.0 kB	[list of files]