Package: seqtk (1.4-2 and others)

[ Source: seqtk  ]

Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Currently, seqtk supports quality based trimming with the phred algorithm, converting fastq to fasta, reverse complementing sequences, extracting or masking subsequences in regions given in a BED/name list file, and more. It contains a subsampling module to sample exactly n sequences or a fraction of sequences.

Seqtk supports both fasta and fastq input files, which can be optionally gzip compressed.

Other Packages Related to seqtk

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download seqtk

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.4-2	33.4 kB	152.0 kB	[list of files]
amd64	1.4-2	33.8 kB	95.0 kB	[list of files]
arm64	1.4-2	31.5 kB	87.0 kB	[list of files]
armel	1.4-2	32.3 kB	91.0 kB	[list of files]
armhf	1.4-2	32.0 kB	71.0 kB	[list of files]
hppa (unofficial port)	1.4-2	34.2 kB	91.0 kB	[list of files]
i386	1.4-2	37.3 kB	103.0 kB	[list of files]
ia64 (unofficial port)	1.4-2	44.4 kB	155.0 kB	[list of files]
m68k (unofficial port)	1.4-2	30.8 kB	87.0 kB	[list of files]
mips64el	1.4-2	32.1 kB	154.0 kB	[list of files]
ppc64 (unofficial port)	1.4-2	36.4 kB	151.0 kB	[list of files]
ppc64el	1.4-2	37.2 kB	151.0 kB	[list of files]
riscv64	1.4-2+b1	34.7 kB	80.0 kB	[list of files]
s390x	1.4-2	33.9 kB	95.0 kB	[list of files]
sh4 (unofficial port)	1.4-2	37.0 kB	87.0 kB	[list of files]
sparc64 (unofficial port)	1.4-2	30.3 kB	1,049.0 kB	[list of files]
x32 (unofficial port)	1.4-2	33.7 kB	91.0 kB	[list of files]