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[ Source: seaview  ]

Package: seaview (1:4.7-1)

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Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, implemented-in::c++, User Interface: Command Line, interface::graphical, interface::x11, Networking: Client, Network Protocol: Need an extra tag, Role: role::program, scope::utility, Interface Toolkit: FLTK, Purpose: Need an extra tag, use::comparing, use::editing, Printing, use::viewing, works-with-format::plaintext, Works with: works-with::biological-sequence, x11::application

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Download seaview

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 353.2 kB1,021.0 kB [list of files]
amd64 340.5 kB849.0 kB [list of files]
arm64 313.1 kB821.0 kB [list of files]
armel 287.0 kB751.0 kB [list of files]
armhf 289.8 kB579.0 kB [list of files]
hppa (unofficial port) 338.6 kB923.0 kB [list of files]
hurd-i386 357.5 kB895.0 kB [list of files]
i386 357.7 kB899.0 kB [list of files]
kfreebsd-amd64 340.7 kB849.0 kB [list of files]
kfreebsd-i386 358.1 kB899.0 kB [list of files]
m68k (unofficial port) 295.3 kB791.0 kB [list of files]
mips 332.8 kB988.0 kB [list of files]
mips64el 335.5 kB1,025.0 kB [list of files]
mipsel 336.7 kB988.0 kB [list of files]
powerpcspe (unofficial port) 317.4 kB919.0 kB [list of files]
ppc64 (unofficial port) 349.9 kB1,113.0 kB [list of files]
ppc64el 364.9 kB1,113.0 kB [list of files]
riscv64 (unofficial port) 319.4 kB694.0 kB [list of files]
s390x 319.7 kB921.0 kB [list of files]
sh4 (unofficial port) 385.5 kB813.0 kB [list of files]
sparc64 (unofficial port) 290.3 kB827.0 kB [list of files]
x32 (unofficial port) 341.8 kB831.0 kB [list of files]