Package: plink1.9 (1.90~b7.2-231211-1 and others)

[ Source: plink1.9  ]

whole-genome association analysis toolset

plink expects as input the data from SNP (single nucleotide polymorphism) chips of many individuals and their phenotypical description of a disease. It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source.

SNPs can evaluated individually or as pairs for their association with the disease phenotypes. The joint investigation of copy number variations is supported. A variety of statistical tests have been implemented.

plink1.9 is a comprehensive update of plink with new algorithms and new methods, faster and less memory consumer than the first plink.

Please note: The executable was renamed to plink1.9 because of a name clash. Please read more about this in /usr/share/doc/plink1.9/README.Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Purpose: Analysing

Other Packages Related to plink1.9

• dep: libatlas3-base [hppa, sh4]

  Automatically Tuned Linear Algebra Software, generic shared

• dep: libblas3 [not hppa, sh4]

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.11) [hppa]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.19) [sh4]

  dep: libc6 (>= 2.34) [not hppa, sh4]

• dep: libgcc-s1 (>= 3.0) [amd64, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgcc1 (>= 1:4.2.1) [sh4]

  Package not available

• dep: libgcc4 (>= 4.1.1) [hppa]

  Package not available

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  or liblapack.so.3

  virtual package provided by libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1) [not hppa, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 4.2.1) [hppa, sh4]

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

• rec: libopenblas0

  Optimized BLAS (linear algebra) library (meta)

  or libblis4

  BLAS-like Library Instantiation Software Framework (32bit,meta)

Download plink1.9

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.90~b7.2-231211-1	875.0 kB	2,134.0 kB	[list of files]
armel	1.90~b7.2-231211-1	783.1 kB	2,061.0 kB	[list of files]
armhf	1.90~b7.2-231211-1	765.4 kB	1,449.0 kB	[list of files]
hppa (unofficial port)	1.90~b3b-150117-1+b1	803.7 kB	2,006.0 kB	[list of files]
i386	1.90~b7.2-231211-1	881.9 kB	2,377.0 kB	[list of files]
sh4 (unofficial port)	1.90~b3b-150117-1	893.3 kB	1,716.0 kB	[list of files]
x32 (unofficial port)	1.90~b7.2-231211-1	874.1 kB	2,081.0 kB	[list of files]