Package: mindthegap (2.3.0-3 and others)

[ Source: mindthegap  ]

performs detection and assembly of DNA insertion variants in NGS read datasets

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.

Other Packages Related to mindthegap

• dep: libc6 (>= 2.34) [not alpha, hppa, ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.8) [hppa]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgatbcore3 (>= 1.4.2+dfsg-7)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0) [not alpha, hppa, ia64, riscv64, sparc64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libhdf5-103-1 [hppa]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [not hppa]

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 11) [hppa]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [not hppa]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download mindthegap

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.3.0-3+b1	221.6 kB	1,053.0 kB	[list of files]
amd64	2.3.0-3+b1	242.7 kB	1,054.0 kB	[list of files]
arm64	2.3.0-3+b1	217.2 kB	1,050.0 kB	[list of files]
hppa (unofficial port)	2.3.0-1	273.2 kB	1,000.0 kB	[list of files]
ia64 (unofficial port)	2.3.0-3+b1	268.9 kB	1,671.0 kB	[list of files]
mips64el	2.3.0-3+b1	194.3 kB	1,171.0 kB	[list of files]
ppc64 (unofficial port)	2.3.0-3+b1	229.9 kB	1,242.0 kB	[list of files]
ppc64el	2.3.0-3+b1	234.5 kB	1,178.0 kB	[list of files]
riscv64	2.3.0-3+b1	235.3 kB	866.0 kB	[list of files]
sparc64 (unofficial port)	2.3.0-3+b1	201.7 kB	1,056.0 kB	[list of files]
x32 (unofficial port)	2.3.0-3+b1	244.9 kB	937.0 kB	[list of files]