Package: lighter (1.1.2-7 and others)

[ Source: lighter  ]

fast and memory-efficient sequencing error corrector

Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted in inverse proportion to the depth of sequencing, Bloom filter size can be held constant while maintaining near-constant accuracy. Lighter is parallelized, uses no secondary storage, and is both faster and more memory-efficient than competing approaches while achieving comparable accuracy.

Other Packages Related to lighter

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, i386, ia64, m68k, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download lighter

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1.2-7	49.9 kB	180.0 kB	[list of files]
amd64	1.1.2-7	46.2 kB	124.0 kB	[list of files]
arm64	1.1.2-7	44.1 kB	116.0 kB	[list of files]
armel	1.1.2-7	44.0 kB	179.0 kB	[list of files]
armhf	1.1.2-7	44.1 kB	115.0 kB	[list of files]
hppa (unofficial port)	1.1.2-7	53.3 kB	128.0 kB	[list of files]
i386	1.1.2-7	51.1 kB	135.0 kB	[list of files]
ia64 (unofficial port)	1.1.2-7	56.1 kB	185.0 kB	[list of files]
m68k (unofficial port)	1.1.2-7	47.7 kB	131.0 kB	[list of files]
mips64el	1.1.2-7	48.8 kB	182.0 kB	[list of files]
ppc64 (unofficial port)	1.1.2-7	49.2 kB	180.0 kB	[list of files]
ppc64el	1.1.2-7	49.7 kB	180.0 kB	[list of files]
riscv64	1.1.2-7+b1	48.2 kB	109.0 kB	[list of files]
s390x	1.1.2-7	45.8 kB	128.0 kB	[list of files]
sh4 (unofficial port)	1.1.2-7	57.9 kB	179.0 kB	[list of files]
sparc64 (unofficial port)	1.1.2-7	47.9 kB	1,078.0 kB	[list of files]
x32 (unofficial port)	1.1.2-7	45.5 kB	115.0 kB	[list of files]