Package: ariba (2.14.7+ds-2 and others)

[ Source: ariba  ]

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::python, User Interface: Command Line, Role: role::program, scope::application, Purpose: Analysing

Other Packages Related to ariba

• dep: bowtie2 [not m68k]

  ultrafast memory-efficient short read aligner

  dep: bowtie2 (>= 2.1.0) [m68k]

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: fastaq [not m68k]

  FASTA and FASTQ file manipulation tools

  dep: fastaq (>= 3.12.0) [m68k]

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [m68k, mips64el]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libfml0 (>= 0.1) [not m68k]

  library for assembling Illumina short reads in small regions

  dep: libfml0 (>= 0.1-4~) [m68k]

• dep: libgcc-s1 (>= 3.0) [not m68k]

  GCC support library

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libminimap0 (>= 0.2)

  library for approximate mapping of long biosequences

• dep: libstdc++6 (>= 13.1) [not m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [m68k]

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.11) [m68k]

  dep: python3 (<< 3.13) [not m68k]

  dep: python3 (>= 3.11~) [not m68k]

  dep: python3 (>= 3.9~) [m68k]

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-bs4 [m68k]

  error-tolerant HTML parser for Python 3

  dep: python3-bs4 (>= 4.1.0) [not m68k]

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-pymummer [not m68k]

  Python 3 interface to MUMmer

  dep: python3-pymummer (>= 0.10.2) [m68k]

• dep: python3-pysam [not m68k]

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

  dep: python3-pysam (>= 0.9.1) [m68k]

• dep: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: spades

  genome assembler for single-cell and isolates data sets

Download ariba

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.14.7+ds-2	1,907.8 kB	20,732.0 kB	[list of files]
amd64	2.14.7+ds-2	1,909.6 kB	20,588.0 kB	[list of files]
arm64	2.14.7+ds-2	1,905.1 kB	20,732.0 kB	[list of files]
m68k (unofficial port)	2.14.6+ds-2+b1	1,910.0 kB	20,567.0 kB	[list of files]
mips64el	2.14.7+ds-2	1,906.8 kB	20,740.0 kB	[list of files]
ppc64el	2.14.7+ds-2	1,909.2 kB	20,732.0 kB	[list of files]
riscv64	2.14.7+ds-2	1,909.0 kB	20,532.0 kB	[list of files]