[ Source: allelecount ]
Package: allelecount (4.3.0-2 and others)
Links for allelecount
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Download Source Package allelecount:
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- Homepage [github.com]
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NGS copy number algorithms
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).
The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.
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Download allelecount
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 4.3.0-2+b1 | 28.2 kB | 119.0 kB | [list of files] |
| amd64 | 4.3.0-2+b1 | 28.7 kB | 91.0 kB | [list of files] |
| arm64 | 4.3.0-2+b1 | 27.8 kB | 119.0 kB | [list of files] |
| armel | 4.3.0-2+b1 | 28.3 kB | 86.0 kB | [list of files] |
| armhf | 4.3.0-2+b1 | 27.2 kB | 78.0 kB | [list of files] |
| hppa (unofficial port) | 4.3.0-2+b1 | 27.8 kB | 87.0 kB | [list of files] |
| i386 | 4.3.0-2+b1 | 29.1 kB | 90.0 kB | [list of files] |
| ia64 (unofficial port) | 4.3.0-2+b1 | 32.1 kB | 111.0 kB | [list of files] |
| m68k (unofficial port) | 4.3.0-2+b1 | 27.1 kB | 86.0 kB | [list of files] |
| mips64el | 4.3.0-2+b1 | 27.3 kB | 121.0 kB | [list of files] |
| ppc64 (unofficial port) | 4.3.0-2+b1 | 29.4 kB | 119.0 kB | [list of files] |
| ppc64el | 4.3.0-2+b1 | 30.0 kB | 119.0 kB | [list of files] |
| riscv64 | 4.3.0-2+b2 | 28.3 kB | 83.0 kB | [list of files] |
| s390x | 4.3.0-2+b1 | 28.3 kB | 91.0 kB | [list of files] |
| sh4 (unofficial port) | 4.3.0-2+b1 | 29.2 kB | 118.0 kB | [list of files] |
| sparc64 (unofficial port) | 4.3.0-2+b1 | 27.2 kB | 1,081.0 kB | [list of files] |
| x32 (unofficial port) | 4.3.0-2+b1 | 28.7 kB | 90.0 kB | [list of files] |