Package: r-bioc-rtracklayer (1.62.0-1 and others)

[ Source: r-bioc-rtracklayer  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Other Packages Related to r-bioc-rtracklayer

• dep: libc6 (>= 2.15) [m68k]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.28) [sparc64]

  dep: libc6 (>= 2.34) [not alpha, ia64, m68k, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libssl1.1 (>= 1.1.0) [m68k]

  Package not available

• dep: r-api-3.4 [m68k]

  Package not available

• dep: r-api-3.5 [sparc64]

  Package not available

• dep: r-api-4.0 [not m68k, sparc64]

  virtual package provided by r-base-core

• dep: r-api-bioc-3.16 [x32]

  Package not available

• dep: r-api-bioc-3.18 [not m68k, sparc64, x32]

  virtual package provided by r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Package not available

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.13.8) [m68k]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.25.1) [sparc64]

  dep: r-bioc-biocgenerics (>= 0.35.3) [not m68k, sparc64]

• dep: r-bioc-biocio [not m68k, sparc64]

  standard input and output for Bioconductor packages

• dep: r-bioc-biostrings (>= 2.43.7) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [not m68k]

• dep: r-bioc-genomeinfodb (>= 1.15.2) [not m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.3.14) [m68k]

• dep: r-bioc-genomicalignments (>= 1.15.6) [not m68k]

  BioConductor representation and manipulation of short genomic alignments

  dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]

• dep: r-bioc-genomicranges (>= 1.21.20) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [sparc64]

  dep: r-bioc-genomicranges (>= 1.37.2) [not m68k, sparc64]

• dep: r-bioc-iranges (>= 2.11.12) [m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.13.13) [not m68k]

• dep: r-bioc-rsamtools (>= 1.17.8) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [not m68k]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.19.22) [sparc64]

  dep: r-bioc-s4vectors (>= 0.23.18) [not m68k, sparc64]

• dep: r-bioc-xvector (>= 0.19.7) [not m68k]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.9.4) [m68k]

• dep: r-bioc-zlibbioc [not m68k]

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-rcurl (>= 1.4-2)

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-restfulr (>= 0.0.13) [not m68k, sparc64]

  GNU R interface to RESTful web wervices

• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-bsgenome (>= 1.33.4)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-org.hs.eg.db [not m68k, sparc64]

  genome-wide annotation for Human

• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-rtracklayer

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.62.0-1	4,974.5 kB	6,780.0 kB	[list of files]
amd64	1.62.0-1	4,974.4 kB	6,688.0 kB	[list of files]
arm64	1.62.0-1	4,961.8 kB	6,780.0 kB	[list of files]
hppa (unofficial port)	1.62.0-1	4,970.1 kB	6,722.0 kB	[list of files]
ia64 (unofficial port)	1.62.0-1	5,004.6 kB	7,092.0 kB	[list of files]
m68k (unofficial port)	1.38.0-1	1,824.3 kB	2,765.0 kB	[list of files]
mips64el	1.62.0-1	4,947.4 kB	6,763.0 kB	[list of files]
ppc64 (unofficial port)	1.62.0-1	4,995.6 kB	7,049.0 kB	[list of files]
ppc64el	1.62.0-1	4,994.2 kB	6,908.0 kB	[list of files]
riscv64	1.62.0-1+b1	4,975.7 kB	6,629.0 kB	[list of files]
s390x	1.62.0-1	4,972.8 kB	6,736.0 kB	[list of files]
sh4 (unofficial port)	1.62.0-1	4,982.8 kB	6,647.0 kB	[list of files]
sparc64 (unofficial port)	1.42.1-2	2,356.6 kB	3,783.0 kB	[list of files]
x32 (unofficial port)	1.58.0-1	4,983.9 kB	6,659.0 kB	[list of files]