Package: r-bioc-dropletutils (1.22.0+ds-1 and others)

[ Source: r-bioc-dropletutils  ]

BioConductor utilities for handling single-cell droplet data

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Other Packages Related to r-bioc-dropletutils

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libhdf5-103-1 [sh4, x32]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [not sh4, x32]

  HDF5 C runtime files - serial version

• dep: libhdf5-cpp-103-1 (>= 1.10.5) [sh4, x32]

  HDF5 - C++ runtime files - serial version

• dep: libhdf5-cpp-103-1t64 (>= 1.10.5) [not sh4, x32]

  HDF5 - C++ runtime files - serial version

• dep: libstdc++6 (>= 11) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [not x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.16 [x32]

  Package not available

• dep: r-api-bioc-3.18 [not x32]

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-hdf5array

  HDF5 backend for DelayedArray objects

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rhdf5

  BioConductor HDF5 interface to R

• dep: r-bioc-rhdf5lib

  GNU R hdf5 library

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-bh

  (Virtual) GNU R package to provide BH

• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-r.utils

  GNU R various programming utilities

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Download r-bioc-dropletutils

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.22.0+ds-1+b1	381.4 kB	827.0 kB	[list of files]
amd64	1.22.0+ds-1+b1	388.1 kB	730.0 kB	[list of files]
arm64	1.22.0+ds-1+b1	371.3 kB	762.0 kB	[list of files]
armel	1.22.0+ds-1+b1	369.3 kB	689.0 kB	[list of files]
armhf	1.22.0+ds-1+b1	371.6 kB	616.0 kB	[list of files]
hppa (unofficial port)	1.22.0+ds-1+b1	384.2 kB	775.0 kB	[list of files]
i386	1.22.0+ds-1+b1	392.3 kB	744.0 kB	[list of files]
ia64 (unofficial port)	1.22.0+ds-1+b1	404.7 kB	1,078.0 kB	[list of files]
mips64el	1.22.0+ds-1+b1	368.5 kB	850.0 kB	[list of files]
ppc64 (unofficial port)	1.22.0+ds-1+b1	388.5 kB	894.0 kB	[list of files]
ppc64el	1.22.0+ds-1+b1	387.5 kB	826.0 kB	[list of files]
riscv64	1.22.0+ds-1+b1	387.1 kB	673.0 kB	[list of files]
s390x	1.22.0+ds-1+b1	388.4 kB	762.0 kB	[list of files]
sh4 (unofficial port)	1.22.0+ds-1	400.2 kB	759.0 kB	[list of files]
sparc64 (unofficial port)	1.22.0+ds-1+b1	364.2 kB	1,409.0 kB	[list of files]
x32 (unofficial port)	1.18.1+ds-1	380.4 kB	693.0 kB	[list of files]