Package: r-bioc-demixt (1.18.0+dfsg-1 and others)

[ Source: r-bioc-demixt  ]

Cell type-specific deconvolution of heterogeneous tumor samples

When studying cancer cells from tumors excised from patients, the samples will be a mixture of tumors and healthy cells, e.g. from invading immune cells. For comparing samples, the interest may be more on comparing the transcriptome of the tumors themselves.

This package prepares the statistical separation (deconvolution) of RNAseq or microarray generated expression data for two or three components.

Other Packages Related to r-bioc-demixt

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.31) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [not hppa, ia64, m68k, sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1) [not m68k, sh4, sparc64, x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [m68k, sh4, sparc64, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.13 [sh4, x32]

  Package not available

• dep: r-api-bioc-3.15 [m68k, sparc64]

  Package not available

• dep: r-api-bioc-3.17 [hppa, ia64]

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• dep: r-api-bioc-3.18 [not hppa, ia64, m68k, sh4, sparc64, x32]

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• dep: r-base-core (>= 4.1.1-2) [sh4, x32]

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  dep: r-base-core (>= 4.2.0-1) [m68k, sparc64]

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• dep: r-bioc-summarizedexperiment

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• dep: r-bioc-sva [not m68k, sh4, sparc64, x32]

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• dep: r-cran-base64enc

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• dep: r-cran-dendextend [not m68k, sh4, sparc64, x32]

  Extending 'dendrogram' Functionality in GNU R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

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Download r-bioc-demixt

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.18.0+dfsg-1	2,584.9 kB	3,253.0 kB	[list of files]
amd64	1.18.0+dfsg-1	2,601.1 kB	3,144.0 kB	[list of files]
arm64	1.18.0+dfsg-1	2,578.9 kB	3,124.0 kB	[list of files]
hppa (unofficial port)	1.16.0+dfsg-1	2,591.9 kB	3,192.0 kB	[list of files]
ia64 (unofficial port)	1.16.0+dfsg-1	2,607.7 kB	3,521.0 kB	[list of files]
m68k (unofficial port)	1.12.0+dfsg-1	2,501.0 kB	3,006.0 kB	[list of files]
mips64el	1.18.0+dfsg-1	2,570.7 kB	3,200.0 kB	[list of files]
ppc64 (unofficial port)	1.18.0+dfsg-1	2,588.0 kB	3,256.0 kB	[list of files]
ppc64el	1.18.0+dfsg-1	2,589.8 kB	3,188.0 kB	[list of files]
riscv64	1.18.0+dfsg-1	2,593.9 kB	3,064.0 kB	[list of files]
s390x	1.18.0+dfsg-1	2,589.9 kB	3,132.0 kB	[list of files]
sh4 (unofficial port)	1.8.0-1	4,449.0 kB	4,971.0 kB	[list of files]
sparc64 (unofficial port)	1.12.0+dfsg-1	2,486.0 kB	3,005.0 kB	[list of files]
x32 (unofficial port)	1.8.0-1	4,439.5 kB	4,944.0 kB	[list of files]