Package: python3-pairtools (1.0.3-1 and others)

[ Source: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

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• dep: cython3 [hppa, ia64, ppc64, sparc64, x32]

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• dep: libc6 (>= 2.14) [amd64]

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Download python3-pairtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0.3-1	207.9 kB	1,177.0 kB	[list of files]
amd64	1.0.3-1	226.4 kB	1,021.0 kB	[list of files]
arm64	1.0.3-1	202.3 kB	1,043.0 kB	[list of files]
armel	1.0.3-1	199.0 kB	903.0 kB	[list of files]
armhf	1.0.3-1	203.9 kB	763.0 kB	[list of files]
hppa (unofficial port)	0.3.0-3.2+b2	144.6 kB	640.0 kB	[list of files]
i386	1.0.3-1	226.5 kB	1,007.0 kB	[list of files]
ia64 (unofficial port)	0.3.0-3.2+b1	137.3 kB	612.0 kB	[list of files]
m68k (unofficial port)	1.0.3-1	202.5 kB	923.0 kB	[list of files]
mips64el	1.0.3-1	194.3 kB	1,191.0 kB	[list of files]
ppc64 (unofficial port)	0.3.0-3.2+b2	146.6 kB	752.0 kB	[list of files]
ppc64el	1.0.3-1	217.0 kB	1,171.0 kB	[list of files]
riscv64	1.0.3-1	221.6 kB	871.0 kB	[list of files]
sh4 (unofficial port)	1.0.3-1+b1	309.0 kB	1,152.0 kB	[list of files]
sparc64 (unofficial port)	0.3.0-3.2+b2	125.9 kB	2,292.0 kB	[list of files]
x32 (unofficial port)	0.3.0-3.2+b1	121.6 kB	405.0 kB	[list of files]