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Package: pscan-tfbs (1.2.2-2)

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search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

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Download pscan-tfbs

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 69.5 kB210.0 kB [list of files]
amd64 67.3 kB185.0 kB [list of files]
arm64 61.4 kB161.0 kB [list of files]
armel 59.2 kB157.0 kB [list of files]
armhf 59.7 kB121.0 kB [list of files]
hppa (unofficial port) 67.4 kB170.0 kB [list of files]
hurd-i386 72.2 kB188.0 kB [list of files]
i386 72.3 kB188.0 kB [list of files]
kfreebsd-amd64 67.1 kB186.0 kB [list of files]
kfreebsd-i386 72.2 kB188.0 kB [list of files]
m68k (unofficial port) 57.1 kB160.0 kB [list of files]
mips 62.9 kB192.0 kB [list of files]
mips64el 63.6 kB190.0 kB [list of files]
mipsel 63.8 kB192.0 kB [list of files]
powerpcspe (unofficial port) 63.8 kB225.0 kB [list of files]
ppc64 (unofficial port) 67.9 kB227.0 kB [list of files]
ppc64el 67.6 kB225.0 kB [list of files]
riscv64 (unofficial port) 65.8 kB146.0 kB [list of files]
s390x 62.9 kB186.0 kB [list of files]
sh4 (unofficial port) 73.9 kB152.0 kB [list of files]
sparc64 (unofficial port) 58.9 kB172.0 kB [list of files]
x32 (unofficial port) 66.4 kB173.0 kB [list of files]