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[ Source: prime-phylo  ]

Package: prime-phylo (1.0.11-4 and others)

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bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

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Download prime-phylo

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.0.11-4+b3 831.8 kB4,020.0 kB [list of files]
amd64 1.0.11-4+b3 836.3 kB3,452.0 kB [list of files]
arm64 1.0.11-4+b3 755.6 kB3,388.0 kB [list of files]
armel 1.0.11-4+b3 680.9 kB2,533.0 kB [list of files]
armhf 1.0.11-4+b3 695.7 kB1,997.0 kB [list of files]
hppa (unofficial port) 1.0.11-4 850.5 kB3,948.0 kB [list of files]
hurd-i386 1.0.11-4+b3 913.3 kB3,401.0 kB [list of files]
i386 1.0.11-4+b3 909.8 kB3,417.0 kB [list of files]
kfreebsd-amd64 1.0.11-4+b3 830.2 kB3,428.0 kB [list of files]
kfreebsd-i386 1.0.11-4+b3 903.2 kB3,385.0 kB [list of files]
mips 1.0.11-4+b3 723.7 kB3,824.0 kB [list of files]
mips64el 1.0.11-4+b3 742.9 kB4,937.0 kB [list of files]
mipsel 1.0.11-4+b3 737.9 kB3,824.0 kB [list of files]
powerpc 1.0.11-4+b3 795.1 kB3,872.0 kB [list of files]
powerpcspe (unofficial port) 1.0.11-4+b3 803.7 kB3,936.0 kB [list of files]
ppc64 (unofficial port) 1.0.11-4+b3 820.0 kB4,840.0 kB [list of files]
ppc64el 1.0.11-4+b3 813.8 kB4,200.0 kB [list of files]
s390x 1.0.11-4+b3 790.9 kB3,860.0 kB [list of files]
sparc64 (unofficial port) 1.0.11-4+b4 695.1 kB3,487.0 kB [list of files]
x32 (unofficial port) 1.0.11-4+b3 840.9 kB3,105.0 kB [list of files]