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[ Source: prime-phylo  ]

Package: prime-phylo (1.0.11-7 and others)

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bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

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Download prime-phylo

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.0.11-7+b1 805.3 kB3,866.0 kB [list of files]
amd64 1.0.11-7+b1 829.7 kB3,460.0 kB [list of files]
arm64 1.0.11-7+b1 744.5 kB3,279.0 kB [list of files]
armel 1.0.11-7+b1 647.5 kB2,405.0 kB [list of files]
armhf 1.0.11-7+b1 664.1 kB1,929.0 kB [list of files]
hppa (unofficial port) 1.0.11-7+b1 850.5 kB3,951.0 kB [list of files]
hurd-i386 1.0.11-7+b1 889.5 kB3,353.0 kB [list of files]
i386 1.0.11-7+b1 896.0 kB3,413.0 kB [list of files]
kfreebsd-amd64 1.0.11-7 823.0 kB3,387.0 kB [list of files]
kfreebsd-i386 1.0.11-7 892.5 kB3,352.0 kB [list of files]
mips 1.0.11-7+b1 695.9 kB3,701.0 kB [list of files]
mips64el 1.0.11-7+b1 715.9 kB4,826.0 kB [list of files]
mipsel 1.0.11-7+b1 709.6 kB3,701.0 kB [list of files]
powerpcspe (unofficial port) 1.0.11-7+b1 784.7 kB3,746.0 kB [list of files]
ppc64 (unofficial port) 1.0.11-7+b1 844.7 kB4,840.0 kB [list of files]
ppc64el 1.0.11-7+b1 844.4 kB4,328.0 kB [list of files]
riscv64 (unofficial port) 1.0.11-7+b1 793.6 kB2,960.0 kB [list of files]
s390x 1.0.11-7+b1 740.4 kB3,555.0 kB [list of files]
sparc64 (unofficial port) 1.0.11-7+b1 694.8 kB3,425.0 kB [list of files]
x32 (unofficial port) 1.0.11-7 831.1 kB3,080.0 kB [list of files]