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[ Source: prime-phylo  ]

Package: prime-phylo (1.0.11-6 and others)

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bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

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Download prime-phylo

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.0.11-6 808.2 kB3,912.0 kB [list of files]
amd64 1.0.11-6 826.4 kB3,450.0 kB [list of files]
arm64 1.0.11-6 776.6 kB3,401.0 kB [list of files]
armel 1.0.11-6 662.9 kB2,483.0 kB [list of files]
armhf 1.0.11-6 674.9 kB1,951.0 kB [list of files]
hppa (unofficial port) 1.0.11-6 858.2 kB4,003.0 kB [list of files]
hurd-i386 1.0.11-6 886.6 kB3,407.0 kB [list of files]
i386 1.0.11-6 892.1 kB3,431.0 kB [list of files]
kfreebsd-amd64 1.0.11-4+b3 830.2 kB3,428.0 kB [list of files]
kfreebsd-i386 1.0.11-4+b3 903.2 kB3,385.0 kB [list of files]
mips 1.0.11-6 703.2 kB3,764.0 kB [list of files]
mips64el 1.0.11-6 726.6 kB4,890.0 kB [list of files]
mipsel 1.0.11-6 718.8 kB3,764.0 kB [list of files]
powerpcspe (unofficial port) 1.0.11-6 819.2 kB3,935.0 kB [list of files]
ppc64 (unofficial port) 1.0.11-6 850.9 kB4,902.0 kB [list of files]
ppc64el 1.0.11-6 850.4 kB4,326.0 kB [list of files]
s390x 1.0.11-6 756.3 kB3,685.0 kB [list of files]
sparc64 (unofficial port) 1.0.11-6 704.3 kB3,479.0 kB [list of files]
x32 (unofficial port) 1.0.11-6 831.0 kB3,107.0 kB [list of files]