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[ Source: poa  ]

Package: poa (2.0+20060928-5)

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Partial Order Alignment for multiple sequence alignment

POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, works-with-format::plaintext, Works with: Need an extra tag

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 43.3 kB184.0 kB [list of files]
amd64 45.9 kB156.0 kB [list of files]
arm64 41.1 kB164.0 kB [list of files]
armel 44.4 kB167.0 kB [list of files]
armhf 44.1 kB131.0 kB [list of files]
hppa (unofficial port) 42.2 kB208.0 kB [list of files]
hurd-i386 41.3 kB135.0 kB [list of files]
i386 42.6 kB143.0 kB [list of files]
kfreebsd-amd64 45.9 kB156.0 kB [list of files]
kfreebsd-i386 42.5 kB143.0 kB [list of files]
m68k (unofficial port) 36.2 kB135.0 kB [list of files]
mips 39.6 kB183.0 kB [list of files]
mips64el 40.7 kB192.0 kB [list of files]
mipsel 40.2 kB183.0 kB [list of files]
powerpc 38.3 kB183.0 kB [list of files]
powerpcspe (unofficial port) 38.7 kB183.0 kB [list of files]
ppc64 (unofficial port) 41.0 kB185.0 kB [list of files]
ppc64el 41.1 kB184.0 kB [list of files]
s390x 45.8 kB188.0 kB [list of files]
sh4 (unofficial port) 47.6 kB155.0 kB [list of files]
sparc64 (unofficial port) 39.5 kB185.0 kB [list of files]
x32 (unofficial port) 44.4 kB151.0 kB [list of files]