Package: plasmidid (1.6.5+dfsg-2)

[ Source: plasmidid  ]

mapping-based, assembly-assisted plasmid identification tool

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.

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Download plasmidid

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	46.1 kB	331.0 kB	[list of files]
amd64	46.1 kB	331.0 kB	[list of files]
arm64	46.1 kB	331.0 kB	[list of files]
ppc64 (unofficial port)	46.1 kB	331.0 kB	[list of files]