[ Source: parsnp ]
Package: parsnp (2.0.4+dfsg-1)
Links for parsnp
Debian Resources:
Download Source Package parsnp:
Maintainers:
External Resources:
- Homepage [harvest.readthedocs.org]
Similar packages:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Other Packages Related to parsnp
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- dep: libc6.1 (>= 2.34) [alpha]
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- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]
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- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC support library
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC support library
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- dep: libgomp1 (>= 6)
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- dep: libmuscle1 (>= 3.7+4565)
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- dep: libstdc++6 (>= 13.1)
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- dep: libunwind8 [ia64]
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Download parsnp
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| alpha (unofficial port) | 204.0 kB | 2,010.0 kB | [list of files] |
| amd64 | 199.9 kB | 1,945.0 kB | [list of files] |
| arm64 | 189.9 kB | 1,945.0 kB | [list of files] |
| armel | 185.5 kB | 1,904.0 kB | [list of files] |
| armhf | 181.7 kB | 1,824.0 kB | [list of files] |
| hppa (unofficial port) | 199.2 kB | 1,914.0 kB | [list of files] |
| i386 | 198.6 kB | 1,940.0 kB | [list of files] |
| ia64 (unofficial port) | 255.7 kB | 2,244.0 kB | [list of files] |
| m68k (unofficial port) | 189.5 kB | 1,928.0 kB | [list of files] |
| mips64el | 201.4 kB | 2,020.0 kB | [list of files] |
| ppc64 (unofficial port) | 207.6 kB | 2,009.0 kB | [list of files] |
| ppc64el | 210.6 kB | 2,009.0 kB | [list of files] |
| riscv64 | 217.7 kB | 1,881.0 kB | [list of files] |
| s390x | 182.4 kB | 1,945.0 kB | [list of files] |
| sh4 (unofficial port) | 226.1 kB | 1,945.0 kB | [list of files] |
| sparc64 (unofficial port) | 181.6 kB | 2,653.0 kB | [list of files] |
| x32 (unofficial port) | 201.6 kB | 1,928.0 kB | [list of files] |