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[ Source: parsnp  ]

Package: parsnp (1.5.4+dfsg-1)

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rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

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Download parsnp

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 204.8 kB1,938.0 kB [list of files]
amd64 185.2 kB1,881.0 kB [list of files]
arm64 174.9 kB1,837.0 kB [list of files]
armel 167.3 kB1,836.0 kB [list of files]
armhf 164.4 kB1,760.0 kB [list of files]
hppa (unofficial port) 187.7 kB1,862.0 kB [list of files]
i386 188.3 kB1,900.0 kB [list of files]
m68k (unofficial port) 177.0 kB1,880.0 kB [list of files]
mips64el 185.0 kB1,927.0 kB [list of files]
mipsel 187.4 kB1,925.0 kB [list of files]
ppc64 (unofficial port) 194.7 kB1,945.0 kB [list of files]
ppc64el 197.4 kB1,945.0 kB [list of files]
riscv64 (unofficial port) 200.4 kB1,822.0 kB [list of files]
s390x 169.9 kB1,885.0 kB [list of files]
sh4 (unofficial port) 210.8 kB1,841.0 kB [list of files]
sparc64 (unofficial port) 168.9 kB1,869.0 kB [list of files]
x32 (unofficial port) 187.3 kB1,864.0 kB [list of files]