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[ Source: miniasm  ]

Package: miniasm (0.3+dfsg-2)

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ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

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Download miniasm

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 31.6 kB83.0 kB [list of files]
amd64 29.6 kB70.0 kB [list of files]
arm64 27.8 kB66.0 kB [list of files]
armel 28.3 kB66.0 kB [list of files]
armhf 26.8 kB54.0 kB [list of files]
hppa (unofficial port) 30.0 kB67.0 kB [list of files]
i386 31.9 kB74.0 kB [list of files]
m68k (unofficial port) 26.2 kB66.0 kB [list of files]
mips64el 30.4 kB78.0 kB [list of files]
mipsel 30.0 kB77.0 kB [list of files]
ppc64 (unofficial port) 32.5 kB147.0 kB [list of files]
ppc64el 32.6 kB83.0 kB [list of files]
riscv64 (unofficial port) 28.7 kB55.0 kB [list of files]
s390x 28.5 kB74.0 kB [list of files]
sh4 (unofficial port) 29.3 kB58.0 kB [list of files]
sparc64 (unofficial port) 26.8 kB68.0 kB [list of files]
x32 (unofficial port) 29.4 kB70.0 kB [list of files]