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[ Source: mafft  ]

Package: mafft (7.307-1)

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Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods:
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

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Architecture Package Size Installed Size Files
alpha (unofficial port) 828.6 kB11,293.0 kB [list of files]
amd64 868.4 kB9,088.0 kB [list of files]
arm64 670.8 kB7,920.0 kB [list of files]
armel 760.5 kB9,254.0 kB [list of files]
armhf 642.5 kB6,290.0 kB [list of files]
hppa (unofficial port) 734.5 kB8,689.0 kB [list of files]
hurd-i386 821.7 kB9,782.0 kB [list of files]
i386 815.8 kB9,742.0 kB [list of files]
kfreebsd-amd64 843.8 kB9,176.0 kB [list of files]
kfreebsd-i386 818.7 kB9,742.0 kB [list of files]
m68k (unofficial port) 722.2 kB8,042.0 kB [list of files]
mips 719.7 kB10,139.0 kB [list of files]
mips64el 732.4 kB10,356.0 kB [list of files]
mipsel 744.1 kB10,139.0 kB [list of files]
powerpc 625.4 kB10,706.0 kB [list of files]
powerpcspe (unofficial port) 626.5 kB10,322.0 kB [list of files]
ppc64 (unofficial port) 735.4 kB11,354.0 kB [list of files]
ppc64el 706.8 kB11,096.0 kB [list of files]
s390x 782.9 kB11,084.0 kB [list of files]
sh4 (unofficial port) 724.3 kB8,916.0 kB [list of files]
sparc64 (unofficial port) 794.6 kB10,480.0 kB [list of files]
x32 (unofficial port) 859.3 kB9,066.0 kB [list of files]