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[ Source: mafft  ]

Package: mafft (7.407-2)

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Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods:
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 922.9 kB13,063.0 kB [list of files]
amd64 976.0 kB10,852.0 kB [list of files]
arm64 852.7 kB9,972.0 kB [list of files]
armel 833.9 kB10,432.0 kB [list of files]
armhf 700.1 kB7,144.0 kB [list of files]
hppa (unofficial port) 808.6 kB10,156.0 kB [list of files]
hurd-i386 912.1 kB11,720.0 kB [list of files]
i386 886.3 kB11,784.0 kB [list of files]
kfreebsd-amd64 938.3 kB10,788.0 kB [list of files]
kfreebsd-i386 906.6 kB11,672.0 kB [list of files]
m68k (unofficial port) 878.1 kB9,952.0 kB [list of files]
mips 840.8 kB11,806.0 kB [list of files]
mips64el 812.0 kB12,089.0 kB [list of files]
mipsel 874.6 kB11,846.0 kB [list of files]
powerpcspe (unofficial port) 680.4 kB11,752.0 kB [list of files]
ppc64 (unofficial port) 921.9 kB14,599.0 kB [list of files]
ppc64el 895.6 kB14,087.0 kB [list of files]
riscv64 (unofficial port) 883.3 kB7,912.0 kB [list of files]
s390x 843.1 kB12,368.0 kB [list of files]
sh4 (unofficial port) 804.9 kB10,322.0 kB [list of files]
sparc64 (unofficial port) 757.6 kB10,796.0 kB [list of files]
x32 (unofficial port) 957.5 kB10,340.0 kB [list of files]