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[ Source: mafft  ]

Package: mafft (7.310-1)

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Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods:
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

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Architecture Package Size Installed Size Files
alpha (unofficial port) 835.6 kB11,270.0 kB [list of files]
amd64 871.8 kB9,149.0 kB [list of files]
arm64 670.0 kB7,899.0 kB [list of files]
armel 753.3 kB9,119.0 kB [list of files]
armhf 641.9 kB6,223.0 kB [list of files]
hppa (unofficial port) 722.8 kB8,622.0 kB [list of files]
hurd-i386 815.3 kB9,707.0 kB [list of files]
i386 811.3 kB9,663.0 kB [list of files]
kfreebsd-amd64 846.3 kB9,213.0 kB [list of files]
kfreebsd-i386 809.8 kB9,667.0 kB [list of files]
m68k (unofficial port) 726.9 kB8,091.0 kB [list of files]
mips 756.3 kB10,034.0 kB [list of files]
mips64el 731.7 kB10,311.0 kB [list of files]
mipsel 783.2 kB10,046.0 kB [list of files]
powerpc 629.2 kB10,835.0 kB [list of files]
powerpcspe (unofficial port) 626.2 kB10,387.0 kB [list of files]
ppc64 (unofficial port) 739.3 kB11,438.0 kB [list of files]
ppc64el 712.5 kB11,289.0 kB [list of files]
s390x 773.0 kB11,029.0 kB [list of files]
sh4 (unofficial port) 717.2 kB8,811.0 kB [list of files]
sparc64 (unofficial port) 724.7 kB10,052.0 kB [list of files]
x32 (unofficial port) 859.9 kB8,999.0 kB [list of files]