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[ Source: htslib  ]

Package: libhts3 (1.11-4)

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C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

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Download libhts3

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 400.0 kB1,080.0 kB [list of files]
amd64 369.6 kB908.0 kB [list of files]
arm64 337.5 kB844.0 kB [list of files]
armel 320.2 kB808.0 kB [list of files]
armhf 324.7 kB600.0 kB [list of files]
hppa (unofficial port) 388.7 kB989.0 kB [list of files]
i386 398.8 kB988.0 kB [list of files]
m68k (unofficial port) 331.8 kB816.0 kB [list of files]
mips64el 341.4 kB985.0 kB [list of files]
mipsel 354.4 kB958.0 kB [list of files]
ppc64 (unofficial port) 398.1 kB1,365.0 kB [list of files]
ppc64el 406.1 kB1,301.0 kB [list of files]
riscv64 (unofficial port) 341.3 kB659.0 kB [list of files]
s390x 338.9 kB936.0 kB [list of files]
sh4 (unofficial port) 418.7 kB766.0 kB [list of files]
sparc64 (unofficial port) 328.3 kB878.0 kB [list of files]
x32 (unofficial port) 367.5 kB864.0 kB [list of files]