Package: kleborate (2.4.1-3 and others)

[ Source: kleborate  ]

tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

Other Packages Related to kleborate

• dep: kaptive

  obtain information about K and O types for Klebsiella genome assemblies

• dep: kaptive-data

  reference data for kaptive for Klebsiella genome assemblies

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-distutils [m68k]

  distutils package for Python 3.x

Download kleborate

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.4.1-3	7,558.8 kB	62,170.0 kB	[list of files]
amd64	2.4.1-3	7,558.8 kB	62,170.0 kB	[list of files]
arm64	2.4.1-3	7,558.8 kB	62,170.0 kB	[list of files]
m68k (unofficial port)	2.1.0-2	7,518.1 kB	61,504.0 kB	[list of files]
mips64el	2.4.1-3	7,558.8 kB	62,170.0 kB	[list of files]
ppc64 (unofficial port)	2.4.1-3	7,555.3 kB	62,001.0 kB	[list of files]
ppc64el	2.4.1-3	7,558.8 kB	62,170.0 kB	[list of files]
riscv64	2.4.1-3	7,558.8 kB	62,170.0 kB	[list of files]
s390x	2.4.1-3	7,555.3 kB	62,001.0 kB	[list of files]