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[ Source: hmmer  ]

Package: hmmer (3.3.2+dfsg-1 and others)

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profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::searching, works-with-format::plaintext, Works with: Databases

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Download hmmer

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 3.1b2-1 1,129.7 kB13,177.0 kB [list of files]
amd64 3.3.2+dfsg-1 1,126.1 kB7,293.0 kB [list of files]
hppa (unofficial port) 3.1b2-1 969.6 kB10,721.0 kB [list of files]
i386 3.3.2+dfsg-1 1,144.7 kB7,031.0 kB [list of files]
m68k (unofficial port) 3.1b2-1 850.4 kB8,566.0 kB [list of files]
ppc64 (unofficial port) 3.3.2+dfsg-1 1,076.0 kB7,893.0 kB [list of files]
sh4 (unofficial port) 3.1b2-1 908.8 kB8,358.0 kB [list of files]
sparc64 (unofficial port) 3.1b2-1 840.5 kB9,376.0 kB [list of files]
x32 (unofficial port) 3.3.2+dfsg-1 1,136.4 kB7,192.0 kB [list of files]