Package: gromacs-mpi (2021.4-2) [debports]

[ Source:  ]

Molecular dynamics sim, binaries for MPI parallelization

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.

It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers.

This package contains only the core simulation engine with parallel support using the default MPI interface on the chosen architecture. It is suitable for nodes of a processing cluster, or for multiprocessor machines.

Other Packages Related to gromacs-mpi

• dep: libc6 (>= 2.32)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libfftw3-double3 (>= 3.3.5)

  Library for computing Fast Fourier Transforms - Double precision

• dep: libfftw3-single3 (>= 3.3.5)

  Library for computing Fast Fourier Transforms - Single precision

• dep: libgcc-s1 (>= 3.0) [x32]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libhwloc15 (>= 2.6.0)

  Hierarchical view of the machine - shared libs

• dep: libopenmpi3 (>= 4.1.2~rc1)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: mpi-default-bin

  Standard MPI runtime programs (metapackage)

• dep: sse4.2-support [x32]

  CPU feature checking - require SSE4.2

• dep: zlib1g (>= 1:1.2.0)

  compression library - runtime

• rec: gromacs

  Molecular dynamics simulator, with building and analysis tools

• sug: gromacs-data

  GROMACS molecular dynamics sim, data and documentation

Download gromacs-mpi

Download for all available architectures

Architecture	Package Size	Installed Size	Files
hppa (unofficial port)	4,369.0 kB	13,129.0 kB	[list of files]
m68k (unofficial port)	3,356.8 kB	13,779.0 kB	[list of files]
sh4 (unofficial port)	4,881.0 kB	12,147.0 kB	[list of files]
x32 (unofficial port)	6,886.7 kB	18,287.0 kB	[list of files]