Package: grabix (0.1.7-4 and others)

[ Source: grabix  ]

wee tool for random access into BGZF files

In biomedical research it is increasing practice to study the genetic basis of disease. This now frequently comprises the sequencing of human sequences. The output of the machine however is redundant, and the real sequence is the best sequence to explain the redundancy. The exchange of data happens only with compressed files - to huge and redundant to perform otherwise. One should avoid uncompression whenever possible.

grabix leverages the fantastic BGZF library of the samtools package to provide random access into text files that have been compressed with bgzip. grabix creates it's own index (.gbi) of the bgzipped file. Once indexed, one can extract arbitrary lines from the file with the grab command. Or choose random lines with the, well, random command.

Other Packages Related to grabix

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf, hppa, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1) [riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [not riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: tabix

  generic indexer for TAB-delimited genome position files

• dep: zlib1g (>= 1:1.2.0)

  compression library - runtime

Download grabix

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.1.7-4	15.0 kB	92.0 kB	[list of files]
amd64	0.1.7-4	14.4 kB	56.0 kB	[list of files]
arm64	0.1.7-4	13.9 kB	92.0 kB	[list of files]
armel	0.1.7-4	15.5 kB	91.0 kB	[list of files]
armhf	0.1.7-4	14.9 kB	91.0 kB	[list of files]
hppa (unofficial port)	0.1.7-4	16.4 kB	52.0 kB	[list of files]
i386	0.1.7-4	15.7 kB	55.0 kB	[list of files]
ia64 (unofficial port)	0.1.7-4	16.9 kB	63.0 kB	[list of files]
m68k (unofficial port)	0.1.7-4	26.4 kB	108.0 kB	[list of files]
mips64el	0.1.7-4	14.8 kB	93.0 kB	[list of files]
ppc64 (unofficial port)	0.1.7-4	15.0 kB	92.0 kB	[list of files]
ppc64el	0.1.7-4	14.7 kB	92.0 kB	[list of files]
riscv64	0.1.7-4+b1	14.4 kB	49.0 kB	[list of files]
s390x	0.1.7-4	13.8 kB	52.0 kB	[list of files]
sh4 (unofficial port)	0.1.7-4	27.9 kB	148.0 kB	[list of files]
sparc64 (unofficial port)	0.1.7-4	13.9 kB	1,054.0 kB	[list of files]
x32 (unofficial port)	0.1.7-4	14.4 kB	51.0 kB	[list of files]