Package: r-bioc-dada2 (1.30.0+dfsg-1 and others)

[ Source: r-bioc-dada2  ]

sample inference from amplicon sequencing data

The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

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• dep: libstdc++6 (>= 11) [x32]

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• dep: r-bioc-biostrings (>= 2.42.1)

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Download r-bioc-dada2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.30.0+dfsg-1	2,738.8 kB	3,126.0 kB	[list of files]
x32 (unofficial port)	1.26.0+dfsg-1	2,721.0 kB	3,079.0 kB	[list of files]