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[ Source: giira  ]

Package: giira (0.0.20140625-1 and others)

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RNA-Seq driven gene finding incorporating ambiguous reads

GIIRA is a gene prediction method that identifies potential coding regions exclusively based on the mapping of reads from an RNA-Seq experiment. It was foremost designed for prokaryotic gene prediction and is able to resolve genes within the expressed region of an operon. However, it is also applicable to eukaryotes and predicts exon intron structures as well as alternative isoforms.

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Download giira

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.0.20140210-1+b1 137.6 kB195.0 kB [list of files]
amd64 0.0.20140625-1 140.3 kB172.0 kB [list of files]
arm64 (unofficial port) 0.0.20140210-1 137.1 kB195.0 kB [list of files]
kfreebsd-amd64 0.0.20140625-1 140.3 kB172.0 kB [list of files]