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Package: fastlink (4.1P-fix100+dfsg-1 and others)

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faster version of pedigree programs of Linkage

Genetic linkage analysis is a statistical technique used to map genes and find the approximate location of disease genes. There was a standard software package for genetic linkage called LINKAGE. FASTLINK is a significantly modified and improved version of the main programs of LINKAGE that runs much faster sequentially, can run in parallel, allows the user to recover gracefully from a computer crash, and provides abundant new documentation. FASTLINK has been used in over 1000 published genetic linkage studies.

This package contains the following programs:

 ilink:    GEMINI optimization procedure to find a locally
           optimal value of the theta vector of recombination
 linkmap:  calculates location scores of one locus against a
           fixed map of other loci
 lodscore: compares likelihoods at locally optimal theta
 mlink:    calculates lod scores and risk with two of more loci
 unknown:  identify possible genotypes for unknowns

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, Works with: Need an extra tag

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Download fastlink

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 4.1P-fix100+dfsg-1 236.9 kB958.0 kB [list of files]
amd64 4.1P-fix100+dfsg-1+b1 244.2 kB811.0 kB [list of files]
arm64 4.1P-fix100+dfsg-1+b1 232.3 kB855.0 kB [list of files]
armel 4.1P-fix100+dfsg-1+b1 242.9 kB958.0 kB [list of files]
armhf 4.1P-fix100+dfsg-1+b1 231.9 kB682.0 kB [list of files]
hppa (unofficial port) 4.1P-fix100+dfsg-1 221.2 kB798.0 kB [list of files]
hurd-i386 4.1P-fix100+dfsg-1 223.0 kB797.0 kB [list of files]
i386 4.1P-fix100+dfsg-1+b1 246.0 kB870.0 kB [list of files]
kfreebsd-amd64 4.1P-fix100+dfsg-1+b1 242.8 kB827.0 kB [list of files]
kfreebsd-i386 4.1P-fix100+dfsg-1+b1 245.6 kB870.0 kB [list of files]
m68k (unofficial port) 4.1P-fix100+dfsg-1 193.1 kB689.0 kB [list of files]
mips 4.1P-fix100+dfsg-1+b1 230.2 kB918.0 kB [list of files]
mips64el 4.1P-fix100+dfsg-1+b1 235.4 kB944.0 kB [list of files]
mipsel 4.1P-fix100+dfsg-1+b1 233.7 kB918.0 kB [list of files]
powerpc 4.1P-fix100+dfsg-1+b1 217.7 kB1,026.0 kB [list of files]
powerpcspe (unofficial port) 4.1P-fix100+dfsg-1 222.8 kB1,025.0 kB [list of files]
ppc64 (unofficial port) 4.1P-fix100+dfsg-1+b1 220.2 kB1,035.0 kB [list of files]
ppc64el 4.1P-fix100+dfsg-1+b1 221.4 kB1,031.0 kB [list of files]
s390x 4.1P-fix100+dfsg-1+b1 258.7 kB1,091.0 kB [list of files]
sh4 (unofficial port) 4.1P-fix100+dfsg-1 228.8 kB665.0 kB [list of files]
sparc64 (unofficial port) 4.1P-fix100+dfsg-1+b1 223.0 kB820.0 kB [list of files]
x32 (unofficial port) 4.1P-fix100+dfsg-1 231.2 kB769.0 kB [list of files]