Package: edlib-aligner (1.2.6-1)

[ Source: libedlib  ]

edlib sequence alignment tool using edit distance

Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.

Features of libedlib

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

Other Packages Related to edlib-aligner

• dep: libc6 (>= 2.11) [hppa]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.4) [not alpha, amd64, arm64, hppa, ppc64el, riscv64, sh4, x32]

• dep: libc6.1 (>= 2.4) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libedlib0 (= 1.2.6-1)

  library for sequence alignment using edit distance

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

Download edlib-aligner

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	22.0 kB	61.0 kB	[list of files]
amd64	22.3 kB	65.0 kB	[list of files]
arm64	21.3 kB	57.0 kB	[list of files]
armel	19.0 kB	52.0 kB	[list of files]
armhf	19.0 kB	48.0 kB	[list of files]
hppa (unofficial port)	22.3 kB	57.0 kB	[list of files]
i386	22.3 kB	64.0 kB	[list of files]
m68k (unofficial port)	21.0 kB	60.0 kB	[list of files]
mips64el	21.2 kB	62.0 kB	[list of files]
mipsel	21.7 kB	61.0 kB	[list of files]
ppc64 (unofficial port)	23.2 kB	85.0 kB	[list of files]
ppc64el	25.5 kB	85.0 kB	[list of files]
riscv64 (unofficial port)	20.1 kB	49.0 kB	[list of files]
s390x	20.9 kB	61.0 kB	[list of files]
sh4 (unofficial port)	23.5 kB	52.0 kB	[list of files]
sparc64 (unofficial port)	19.7 kB	62.0 kB	[list of files]
x32 (unofficial port)	21.9 kB	64.0 kB	[list of files]