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[ Source: dialign-t  ]

Package: dialign-tx (1.0.2-9)

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Segment-based multiple sequence alignment

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, role::program, Scope: Utility, Purpose: Comparing, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

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Download dialign-tx

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 96.6 kB220.0 kB [list of files]
amd64 83.6 kB219.0 kB [list of files]
arm64 70.3 kB163.0 kB [list of files]
armel 63.2 kB167.0 kB [list of files]
armhf 56.6 kB115.0 kB [list of files]
hppa (unofficial port) 71.6 kB160.0 kB [list of files]
hurd-i386 71.9 kB203.0 kB [list of files]
i386 76.6 kB219.0 kB [list of files]
kfreebsd-amd64 83.9 kB219.0 kB [list of files]
kfreebsd-i386 74.9 kB215.0 kB [list of files]
m68k (unofficial port) 66.2 kB195.0 kB [list of files]
mips 71.5 kB174.0 kB [list of files]
mips64el 85.5 kB211.0 kB [list of files]
mipsel 72.5 kB174.0 kB [list of files]
powerpc 69.3 kB211.0 kB [list of files]
powerpcspe (unofficial port) 79.1 kB211.0 kB [list of files]
ppc64 (unofficial port) 75.6 kB212.0 kB [list of files]
ppc64el 76.3 kB211.0 kB [list of files]
s390x 67.9 kB195.0 kB [list of files]
sh4 (unofficial port) 72.1 kB131.0 kB [list of files]
sparc64 (unofficial port) 69.6 kB173.0 kB [list of files]
x32 (unofficial port) 83.3 kB219.0 kB [list of files]